Command line: [exonerate -m p2g --showtargetgff -q gpx7.fa -t genomic.fa]
Hostname: [ws101188u]

C4 Alignment:
------------
         Query: SPP00000619_2.0 # Protein # Glutathione peroxidase 7 (GPx7) # Zebrafish 
        Target: CM004428.1:subseq(7640000,150000) Ictalurus punctatus breed USDA103 chromosome 15, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 612
   Query range: 0 -> 147
  Target range: 7172 -> 7741

    1 : GlnValSerLeuAlaValAsnValAlaSerGluCysGlyTyrThrAspGluHisTyrLysAs :   21
        ||||||||||||!.!||||||||||||||||||||||||||||||!!:|||||||||! !||
        GlnValSerLeuValValAsnValAlaSerGluCysGlyTyrThrGluGluHisTyrThrAs
 7173 : caggtcTCCTTGGTGGTAAACGTAGCGAGTGAATGTGGCTACACTGAGGAGCACTATACGGA : 7233

   22 : pLeuGlnGlnLeuGlnLysAspPheGlyProPheHisPheAsnValLeuAlaPheProCysA :   42
        ||||||||||||||||::!||||||||||||!:!|||||||||||||||!.!||||||||||
        pLeuGlnGlnLeuGlnArgAspPheGlyProTyrHisPheAsnValLeuGlyPheProCysA
 7234 : CCTGCAGCAGCTGCAGCGGGATTTTGGACCGTACCATTTCAACGTGCTGGGGTTCCCGTGTA : 7296

   43 : snGlnPheGlyGlnGlnGluProGlySerAspLysGluIleAspSerPheValArgArgVal :   62
        ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
        snGlnPheGlyGlnGlnGluProGlySerAspValGluIleAspSerPheValArgArgVal
 7297 : ATCAGTTTGGCCAGCAGGAGCCCGGCAGCGACGTTGAGATCGACAGCTTTGTGAGGCGTGTT : 7356

   63 : TyrGlyValSerPheProIlePheSerLysIleAlaValValGlyIleGlyAlaAsnAsnAl :   83
        ||||||||||||||||||:!!||||||||||||||||||||||||! !||||||||||||||
        TyrGlyValSerPheProLeuPheSerLysIleAlaValValGlyThrGlyAlaAsnAsnAl
 7357 : TATGGAGTCTCGTTTCCTCTCTTCAGCAAAATCGCTGTGGTGGGGACCGGGGCCAACAACGC : 7419

   84 : aTyrLysTyrLeuGly{L}  >>>> Target Intron 1 >>>>  {eu}LeuSerSerL :   93
        |!:!|||||||||!..{:}            128 bp           {!!}      ||| 
        aPheLysTyrLeuAla{V}++                         --{al}SerPheSerL
 7420 : CTTTAAATACCTCGca{g}gt.........................tc{tc}tctttctctc : 7577

   94 : ysHisSerSerValPheLeuLeuIleSerGluAlaSerArgLysGluProThrTrpAsnPhe :  113
                ||||||   |||   ::::::|||..!!!!||||||||||||  !|||||||||
        euSerLeuSerValSerLeuSerLeuThrGluValThrArgLysGluProAspTrpAsnPhe
 7578 : tctctctctctgtctctctctctctcacagaagTGACAAGGAAGGAGCCTGACTGGAATTTC : 7637

  114 : TrpLysTyrLeuIleAspThrAspGlyLysValValAspAlaTrpGlyProGluValSerVa :  134
        ||||||||||||||||||..!|||||||||||||||! !:!!|||||||||:!!||||||||
        TrpLysTyrLeuIleAspValAspGlyLysValValGlySerTrpGlyProGlnValSerVa
 7638 : TGGAAGTATCTGATTGATGTTGATGGTAAAGTCGTCGGTTCGTGGGGTCCTCAAGTGTCCGT : 7700

  135 : lLysGluIleArgProArgIleThrGluMetValArgLys :  147
        ||||||||||||||||!:!|||||||||||||||||||||
        lLysGluIleArgProLysIleThrGluMetValArgLys
 7701 : GAAGGAAATTCGGCCAAAGATCACAGAGATGGTGCGCAAA : 7741

vulgar: SPP00000619_2.0 0 147 . CM004428.1:subseq(7640000,150000) 7172 7741 + 612 M 88 264 S 0 1 5 0 2 I 0 124 3 0 2 S 1 2 M 58 174
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-28
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004428.1:subseq(7640000,150000)	exonerate:protein2genome:local	gene	7173	7741	612	+	.	gene_id 1 ; sequence SPP00000619_2.0 ; gene_orientation +
CM004428.1:subseq(7640000,150000)	exonerate:protein2genome:local	cds	7173	7437	.	+	.	
CM004428.1:subseq(7640000,150000)	exonerate:protein2genome:local	exon	7173	7437	.	+	.	insertions 0 ; deletions 0
CM004428.1:subseq(7640000,150000)	exonerate:protein2genome:local	splice5	7438	7439	.	+	.	intron_id 1 ; splice_site "gt"
CM004428.1:subseq(7640000,150000)	exonerate:protein2genome:local	intron	7438	7565	.	+	.	intron_id 1
CM004428.1:subseq(7640000,150000)	exonerate:protein2genome:local	splice3	7564	7565	.	+	.	intron_id 0 ; splice_site "tc"
CM004428.1:subseq(7640000,150000)	exonerate:protein2genome:local	cds	7566	7741	.	+	.	
CM004428.1:subseq(7640000,150000)	exonerate:protein2genome:local	exon	7566	7741	.	+	.	insertions 0 ; deletions 0
CM004428.1:subseq(7640000,150000)	exonerate:protein2genome:local	similarity	7173	7741	612	+	.	alignment_id 1 ; Query SPP00000619_2.0 ; Align 7173 1 264 ; Align 7568 90 174
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis