Command line: [exonerate -m p2g --showtargetgff -q gpx4b.fa -t genomic.fa]
Hostname: [ws101075u]

C4 Alignment:
------------
         Query: SPP00000622_2.0 # Protein # Glutathione peroxidase 4b (GPx4b) # Zebrafish 
        Target: CM004433.1:subseq(17780000,125000) Ictalurus punctatus breed USDA103 chromosome 20, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 653
   Query range: 1 -> 130
  Target range: 2760 -> 5784

    2 : ArgGlyTyrValCysIleIleThrAsnValAlaSerLysUnkGlyLysThrProValAsnTy :   22
        ||||||!:!||||||||||||||||||||||||||||||   ||||||||||||||||||||
        ArgGlyPheValCysIleIleThrAsnValAlaSerLys***GlyLysThrProValAsnTy
 2761 : AGAGGTTTTGTATGCATCATCACGAACGTAGCCTCTAAATGAGGCAAGACTCCAGTAAACTA : 2821

   23 : rThrGlnLeuAlaAlaMetHisValThrTyrAlaGluLysGlyLeuArgIleLeuGlyPheP :   43
        ||||||||||||||||||||||..!|||||||||||||||||||||||||||||||||||||
        rThrGlnLeuAlaAlaMetHisThrThrTyrAlaGluLysGlyLeuArgIleLeuGlyPheP
 2822 : CACTCAGCTTGCGGCCATGCACACCACGTACGCTGAGAAGGGTTTACGCATCTTGGGCTTCC : 2884

   44 : roCysAsnGlnPheGlyLysGln  >>>> Target Intron 1 >>>>  GluProGlyS :   54
        |||||||||||||||||||||||            628 bp           |||||||||!
        roCysAsnGlnPheGlyLysGln++                         ++GluProGlyT
 2885 : CATGTAACCAGTTTGGAAAACAGgt.........................agGAGCCTGGTA : 3545

   55 : erGluAlaGluIleLysGluPheAlaLysGlyTyrAsnAlaGluPheAspLeuPheSerLys :   74
        !!||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        hrGluAlaGluIleLysGluPheAlaLysGlyTyrAsnAlaGluPheAspLeuPheSerLys
 3546 : CCGAAGCTGAGATTAAGGAGTTTGCGAAAGGTTACAATGCAGAATTTGACCTCTTCAGTAAG : 3605

   75 : IleAspValAsnGlyAspAlaAlaHisProLeuTrpLysTrpMetLysGluGlnProLysGl :   95
        ||||||||||||||||||  !|||||||||||||||||||||||||||!!:||||||!!.||
        IleAspValAsnGlyAspAsnAlaHisProLeuTrpLysTrpMetLysAspGlnProAsnGl
 3606 : ATCGATGTGAACGGAGACAACGCTCATCCTCTCTGGAAGTGGATGAAAGATCAGCCGAATGG : 3668

   96 : yArgGlyThrLeuGly{As}  >>>> Target Intron 2 >>>>  {n}AsnIleLysT :  105
        |!:!||||||||||||{||}           1912 bp           {|}||||||||||
        yLysGlyThrLeuGly{As}++                         ++{n}AsnIleLysT
 3669 : AAAAGGCACTCTGGGA{AA}gt.........................ag{C}AACATCAAGT : 5610

  106 : rpAsnPheThrLys  >>>> Target Intron 3 >>>>  PheLeuIleAspArgGluG :  116
        ||||||||||||||            97 bp            |||||||||||||||||||
        rpAsnPheThrLys++                         ++PheLeuIleAspArgGluG
 5611 : GGAATTTTACCAAGgt.........................agTTTCTCATTGACCGAGAGG : 5740

  117 : lyGlnValValLysArgTyrGlyProMetAspAspProSerVal :  130
        ||||||||||||||||||||||||||||||||||||||||||||
        lyGlnValValLysArgTyrGlyProMetAspAspProSerVal
 5741 : GACAGGTTGTGAAGCGATACGGACCAATGGATGACCCAAGTGTA : 5784

vulgar: SPP00000622_2.0 1 130 . CM004433.1:subseq(17780000,125000) 2760 5784 + 653 M 49 147 5 0 2 I 0 624 3 0 2 M 50 150 S 0 2 5 0 2 I 0 1908 3 0 2 S 1 1 M 8 24 5 0 2 I 0 93 3 0 2 M 21 63
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	gene	2761	5784	653	+	.	gene_id 1 ; sequence SPP00000622_2.0 ; gene_orientation +
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	cds	2761	2907	.	+	.	
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	exon	2761	2907	.	+	.	insertions 0 ; deletions 0
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	splice5	2908	2909	.	+	.	intron_id 1 ; splice_site "GT"
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	intron	2908	3535	.	+	.	intron_id 1
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	splice3	3534	3535	.	+	.	intron_id 0 ; splice_site "AG"
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	cds	3536	3687	.	+	.	
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	exon	3536	3687	.	+	.	insertions 0 ; deletions 0
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	splice5	3688	3689	.	+	.	intron_id 2 ; splice_site "GT"
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	intron	3688	5599	.	+	.	intron_id 2
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	splice3	5598	5599	.	+	.	intron_id 1 ; splice_site "AG"
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	cds	5600	5624	.	+	.	
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	exon	5600	5624	.	+	.	insertions 0 ; deletions 0
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	splice5	5625	5626	.	+	.	intron_id 3 ; splice_site "GT"
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	intron	5625	5721	.	+	.	intron_id 3
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	splice3	5720	5721	.	+	.	intron_id 2 ; splice_site "AG"
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	cds	5722	5784	.	+	.	
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	exon	5722	5784	.	+	.	insertions 0 ; deletions 0
CM004433.1:subseq(17780000,125000)	exonerate:protein2genome:local	similarity	2761	5784	653	+	.	alignment_id 1 ; Query SPP00000622_2.0 ; Align 2761 2 147 ; Align 3536 51 150 ; Align 5601 102 24 ; Align 5722 110 63
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis