Command line: [exonerate -m p2g --showtargetgff -q gpx3b.fa -t genomic.fa]
Hostname: [ws101183u]

C4 Alignment:
------------
         Query: SPP00000623_2.0 # Protein # Glutathione peroxidase 3b (GPx3b) # Zebrafish 
        Target: CM004426.1:subseq(6030000,150000) Ictalurus punctatus breed USDA103 chromosome 13, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 607
   Query range: 0 -> 162
  Target range: 5515 -> 1568

    1 : MetAlaAlaAsnSerValTyrAspPheThrValGluThrLeuGluGluLysSerValSerLe :   21
        ||||||::!!:!|||||||||:!!||||||:!!!!::!!||||||..!||||||||||||||
        MetAlaSerSerSerValTyrAsnPheThrMetAspSerLeuGluArgLysSerValSerLe
 5515 : ATGGCGAGCAGTTCAGTTTACAACTTCACCATGGACTCACTGGAAAGGAAATCTGTTTCTCT : 5455

   22 : uAspIlePheArgGlyLysValLeuLeuIleMetAsnValAlaThrPheUnkGlySerThr  :   42
        |!  :!!!:!|||||||||||||||||||||:!:|||||||||||||||   ||||||||| 
        uGlyValTyrArgGlyLysValLeuLeuIleValAsnValAlaThrPhe***GlySerThr+
 5454 : GGGGGTTTACAGGGGGAAAGTGCTTCTCATCGTCAACGTGGCCACCTTCTGAGGCTCCACTg : 5392

   43 :  >>>> Target Intron 1 >>>>  GlnTyrHisArgMetAsnAlaLeuMetAspMetT :   53
                   358 bp           ||||||||||||:!!|||||||||||||||!  !
        +                         --GlnTyrHisArgLeuAsnAlaLeuMetAspArgP
 5391 : t.........................gtCAGTACCACAGGCTGAATGCACTCATGGACAGAT : 5001

   54 : yrGlyGlyGlnArgPheThrValLeuGlyPheProCysAsnGlnPheGlyLeuGlnSerPro :   73
        :!.!!|||:!!!.!||||||:!!||||||||| !!|||||||||||||||||||||:!!|||
        heSerGlyGluAsnPheThrIleLeuGlyPheSerCysAsnGlnPheGlyLeuGlnAlaPro
 5000 : TCAGTGGTGAGAACTTCACTATTCTGGGATTCTCATGTAATCAGTTTGGACTACAGGCACCA : 4941

   74 : {G}  >>>> Target Intron 2 >>>>  {ly}GluAsnHisGluThrLeuAsnValLe :   83
        {!}           2647 bp           { !}||||||||||||||||||:!!:!!||
        {G}++                         ++{lu}GluAsnHisGluThrLeuAspIleLe
 4940 : {G}gt.........................ag{aG}GAGAATCACGAGACTTTGGACATTCT : 2264

   84 : uGlnHisValArgProGlySerGlyPheLeuProLysPheProIlePheSerArgIleGluV :  104
        |!:!  !||||||||||||.!!.!!|||:!!||||||||||||!!:||||||!:!|||||||
        uArgCysValArgProGlyGlySerPheIleProLysPheProMetPheSerLysIleGluV
 2263 : GCGGTGTGTCAGACCTGGAGGCAGTTTCATCCCAAAGTTCCCCATGTTCAGTAAAATCGAGG : 2201

  105 : alAsnGlySerAspGluAspProLeuTyrAlaTyrLeuLys  >>>> Target Intron  :  118
        ||||||||  !:!!|||!!:|||||||||:!!!:!||||||            456 bp   
        alAsnGlyLeuAsnGluGluProLeuTyrSerPheLeuLys+-                   
 2200 : TTAATGGGCTGAATGAGGAGCCTCTGTACTCCTTCCTGAAGgc................... : 2157

  119 : 3 >>>>  GluSerLeuProPheValAsnProValIleGlyAspIleArgLysLeuTyrTrp :  135
                ! !|||||||||! !||||||||||||||||||||||||!:!||||||||||||
              ++AlaSerLeuProSerValAsnProValIleGlyAspIleLysLysLeuTyrTrp
 2156 : ......agGCGTCTCTGCCTTCTGTGAACCCTGTCATTGGAGACATCAAGAAACTCTATTGG : 1652

  136 : SerProIleLysAlaAsnAspValArgTrpAsnPheGluLysPheLeuIleThrAlaAspGl :  156
        ||||||||||||!.!||||||:!!||||||||||||||||||||||||||||||||||||||
        SerProIleLysValAsnAspIleArgTrpAsnPheGluLysPheLeuIleThrAlaAspGl
 1651 : TCTCCGATTAAAGTCAACGACATCCGCTGGAACTTTGAGAAGTTTCTTATCACTGCAGACGG : 1589

  157 : yArgProTyrLysArgTyr :  162
        |! !||||||!:!||||||
        yLeuProTyrArgArgTyr
 1588 : GCTGCCATACAGACGGTAT : 1569

vulgar: SPP00000623_2.0 0 162 . CM004426.1:subseq(6030000,150000) 5515 1568 - 607 M 41 123 5 0 2 I 0 354 3 0 2 M 32 96 S 0 1 5 0 2 I 0 2643 3 0 2 S 1 2 M 43 129 5 0 2 I 0 452 3 0 2 M 45 135
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	gene	1569	5515	607	-	.	gene_id 1 ; sequence SPP00000623_2.0 ; gene_orientation +
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	cds	5393	5515	.	-	.	
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	exon	5393	5515	.	-	.	insertions 0 ; deletions 0
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	splice5	5391	5392	.	-	.	intron_id 1 ; splice_site "GT"
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	intron	5035	5392	.	-	.	intron_id 1
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	splice3	5035	5036	.	-	.	intron_id 0 ; splice_site "GT"
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	cds	4938	5034	.	-	.	
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	exon	4938	5034	.	-	.	insertions 0 ; deletions 0
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	splice5	4936	4937	.	-	.	intron_id 2 ; splice_site "GT"
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	intron	2291	4937	.	-	.	intron_id 2
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	splice3	2291	2292	.	-	.	intron_id 1 ; splice_site "ag"
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	cds	2160	2290	.	-	.	
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	exon	2160	2290	.	-	.	insertions 0 ; deletions 0
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	splice5	2158	2159	.	-	.	intron_id 3 ; splice_site "GC"
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	intron	1704	2159	.	-	.	intron_id 3
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	splice3	1704	1705	.	-	.	intron_id 2 ; splice_site "AG"
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	cds	1569	1703	.	-	.	
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	exon	1569	1703	.	-	.	insertions 0 ; deletions 0
CM004426.1:subseq(6030000,150000)	exonerate:protein2genome:local	similarity	1569	5515	607	-	.	alignment_id 1 ; Query SPP00000623_2.0 ; Align 5516 1 123 ; Align 5035 42 96 ; Align 2289 75 129 ; Align 1704 118 135
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis