Command line: [exonerate -m p2g --showtargetgff -q gpx2.fa -t genomic.fa]
Hostname: [ws101183u]

C4 Alignment:
------------
         Query: SPP00000616_2.0 # Protein # Glutathione peroxidase 2 (GPx2) # Zebrafish 
        Target: CM004422.1:subseq(9320000,150000) Ictalurus punctatus breed USDA103 chromosome 9, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 873
   Query range: 0 -> 189
  Target range: 1381 -> 2729

    1 : MetThrPheIleAlaLysThrPheTyrAspLeuHisAlaThrThrLeuGluGlyAspThrIl :   21
        ||||||||||||||||||! !||||||||||||!.!|||||||||||||||||||||:!!||
        MetThrPheIleAlaLysMetPheTyrAspLeuArgAlaThrThrLeuGluGlyAspSerIl
 1382 : ATGACCTTCATAGCCAAGATGTTTTATGACCTGCGTGCTACCACGCTGGAAGGGGACTCTAT : 1442

   22 : eAspPheAsnIleTyrArgGlyArgValValLeuIleGluAsnValAlaSerLeuUnkGlyT :   42
        ||||||||||:!!||||||||||||||||||||||||||||||||||||||||||   ||||
        eAspPheAsnValTyrArgGlyArgValValLeuIleGluAsnValAlaSerLeu***GlyT
 1443 : CGATTTTAATGTCTACCGAGGACGAGTGGTACTTATCGAGAATGTTGCATCGCTATGAGGCA : 1505

   43 : hrThrThrGlnAspTyrThrGlnLeuAsnGluLeuGlnSerArgTyrProHisArgLeuVal :   62
        ||||||||!:!||||||!:!|||||||||:!!||||||||||||||||||||||||!!!|||
        hrThrThrArgAspTyrSerGlnLeuAsnGlnLeuGlnSerArgTyrProHisArgPheVal
 1506 : CCACCACCCGGGACTACAGCCAGCTCAACCAGCTCCAGAGCAGGTACCCGCACCGGTTTGTG : 1565

   63 : ValLeuGlyPheProCysAsnGlnPheGlyTyrGln  >>>> Target Intron 1 >>> :   75
        ||||||!.!|||||||||||||||||||||||||||            781 bp        
        ValLeuAlaPheProCysAsnGlnPheGlyTyrGln++                        
 1566 : GTCCTGGCCTTCCCCTGTAATCAGTTTGGCTACCAGgt........................ : 1606

   76 : >  GluAsnCysSerAspGlyGluIleLeuAsnSerLeuLysTyrValArgProGlyGluGl :   94
           |||||||||!!!:!!||||||||||||||||||||||||:!!||||||||||||! !||
         ++GluAsnCysArgAsnGlyGluIleLeuAsnSerLeuLysHisValArgProGlyGlyGl
 1607 : .agGAAAACTGCAGAAATGGAGAGATCCTGAACTCCTTGAAGCACGTACGACCAGGTGGAGG : 2442

   95 : yTyrLysProSerPheThrIlePheGlnLysCysValValAsnGlySerAspAlaHisProV :  115
        |!:!:!!|||! !||||||||||||:!!||||||! !|||||||||:!!..!.!!|||||||
        yPheGluProLeuPheThrIlePheGluLysCysAspValAsnGlyAlaSerThrHisProV
 2443 : GTTTGAGCCTTTGTTCACCATTTTTGAGAAGTGCGATGTGAATGGGGCTAGCACACATCCTG : 2505

  116 : alPheSerTyrLeuLysAspLysLeuProTyrProAspAspAspProValThrLeuIleGln :  135
        |||||:!!||||||||||||||||||||||||||||||||||||||||||:!!|||||||||
        alPheAlaTyrLeuLysAspLysLeuProTyrProAspAspAspProValSerLeuIleGln
 2506 : TCTTCGCATACCTGAAAGACAAACTTCCGTACCCCGATGATGATCCAGTCTCTCTTATTCAG : 2565

  136 : AspProLysTyrLeuValTrpAsnProValSerArgAsnAspIleSerTrpAsnPheGluLy :  156
        |||||||||!:!|||||||||!:!|||:!!||||||!.!|||||||||||||||||||||||
        AspProLysPheLeuValTrpSerProIleSerArgThrAspIleSerTrpAsnPheGluLy
 2566 : GACCCCAAGTTCTTAGTGTGGAGTCCCATCAGCAGAACTGATATCTCATGGAATTTTGAGAA : 2628

  157 : sPheLeuIleGlyProGluGlyGluProPheLysArgTyrSerLysLysPheGlnThrIleA :  177
        ||||||||||||||||||||||||||||||||||||||||||||||!!.|||:!!|||||||
        sPheLeuIleGlyProGluGlyGluProPheLysArgTyrSerLysAsnPheGluThrIleA
 2629 : GTTCCTGATTGGCCCAGAGGGCGAGCCCTTCAAGAGATACAGCAAAAACTTCGAGACCATTA : 2691

  178 : snIleGluProAspIleGlnArgLeuLeuLysLeuThr :  189
        |||||||||||||||||||||||||||||!:!||||||
        snIleGluProAspIleGlnArgLeuLeuArgLeuThr
 2692 : ACATCGAACCTGACATTCAAAGGCTATTGAGGCTGACC : 2729

vulgar: SPP00000616_2.0 0 189 . CM004422.1:subseq(9320000,150000) 1381 2729 + 873 M 74 222 5 0 2 I 0 777 3 0 2 M 115 345
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004422.1:subseq(9320000,150000)	exonerate:protein2genome:local	gene	1382	2729	873	+	.	gene_id 1 ; sequence SPP00000616_2.0 ; gene_orientation +
CM004422.1:subseq(9320000,150000)	exonerate:protein2genome:local	cds	1382	1603	.	+	.	
CM004422.1:subseq(9320000,150000)	exonerate:protein2genome:local	exon	1382	1603	.	+	.	insertions 0 ; deletions 0
CM004422.1:subseq(9320000,150000)	exonerate:protein2genome:local	splice5	1604	1605	.	+	.	intron_id 1 ; splice_site "GT"
CM004422.1:subseq(9320000,150000)	exonerate:protein2genome:local	intron	1604	2384	.	+	.	intron_id 1
CM004422.1:subseq(9320000,150000)	exonerate:protein2genome:local	splice3	2383	2384	.	+	.	intron_id 0 ; splice_site "AG"
CM004422.1:subseq(9320000,150000)	exonerate:protein2genome:local	cds	2385	2729	.	+	.	
CM004422.1:subseq(9320000,150000)	exonerate:protein2genome:local	exon	2385	2729	.	+	.	insertions 0 ; deletions 0
CM004422.1:subseq(9320000,150000)	exonerate:protein2genome:local	similarity	1382	2729	873	+	.	alignment_id 1 ; Query SPP00000616_2.0 ; Align 1382 1 222 ; Align 2385 75 345
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis