Command line: [exonerate -m p2g --showtargetgff -q gpx1b.fa -t genomic.fa]
Hostname: [ws101183u]

C4 Alignment:
------------
         Query: SPP00000624_2.0 # Protein # Glutathione peroxidase 1b (GPx1b) # Zebrafish 
        Target: CM004434.1:subseq(2080000,150000) Ictalurus punctatus breed USDA103 chromosome 21, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 821
   Query range: 5 -> 191
  Target range: 8520 -> 7348

    6 : LysLysPheTyrAspLeuSerAlaLysLeuLeuSerGlyAspLeuLeuAsnPheSerSerLe :   26
        :!!!!.||||||||||||||||||||||||||||||||||||  !|||||||||||||||||
        GlnAsnPheTyrAspLeuSerAlaLysLeuLeuSerGlyAspAsnLeuAsnPheSerSerLe
 8520 : CAGAACTTTTACGACCTTTCAGCCAAGCTGCTGTCGGGTGACAATCTCAATTTCTCCTCGCT : 8460

   27 : uLysGlyLysValValLeuIleGluAsnValAlaSerLeuUnkGlyThrThrValArgAspT :   47
        |||||||||||||||||||:!!||||||||||||||||||   |||||||||||||||||||
        uLysGlyLysValValLeuValGluAsnValAlaSerLeu***GlyThrThrValArgAspT
 8459 : GAAGGGAAAAGTGGTGCTGGTCGAGAACGTGGCGTCTCTCTGAGGCACGACGGTCAGGGACT : 8397

   48 : yrThrGlnMetAsnGluLeuHisSerArgTyrAlaAspGlnGlyLeuValValLeuGlyAla :   67
        ||||||||||||||||||||||||||!:!|||:!!!!::!!|||||||||||||||||||||
        yrThrGlnMetAsnGluLeuHisSerLysTyrSerGluLysGlyLeuValValLeuGlyAla
 8396 : ACACTCAGATGAACGAGCTCCACTCCAAATACTCGGAGAAGGGGCTTGTTGTGCTGGGAGCT : 8337

   68 : ProCysAsnGlnPheGlyHisGln  >>>> Target Intron 1 >>>>  GluAsnCys :   78
        ||||||||||||||||||||||||            614 bp           ||||||  !
        ProCysAsnGlnPheGlyHisGln++                         ++GluAsnAsp
 8336 : CCCTGCAACCAGTTCGGCCATCAGgt.........................agGAAAACGAC : 7690

   79 : LysAsnGluGluIleLeuGlnSerLeuLysTyrValArgProGlyAsnGlyPheGluProLy :   99
        ||||||||||||||||||.!.||||||||||||||||||||||||||||||||||||||| !
        LysAsnGluGluIleLeuAsnSerLeuLysTyrValArgProGlyAsnGlyPheGluProHi
 7689 : AAGAACGAAGAAATCCTGAACTCCTTGAAGTACGTACGTCCTGGGAACGGCTTCGAGCCTCA : 7627

  100 : sPheGlnIleLeuGluLysLeuGluValAsnGlyGluAsnAlaHisProLeuPheAlaPheL :  120
         ||||||:!!|||:!!|||:!!!!:|||||||||:!!:!!|||||||||||||||!.!||||
        sPheGlnLeuLeuGlnLysIleAspValAsnGlyLysAspAlaHisProLeuPheValPheL
 7626 : CTTCCAGCTACTGCAAAAGATTGACGTGAACGGCAAGGATGCGCACCCCCTGTTCGTGTTTC : 7564

  121 : euLysGluLysLeuProGlnProSerAspAspProValSerLeuMetGlyAspProLysPhe :  140
        |||||||||||||||||   |||||||||:!!|||..!:!!||||||  !||||||||||||
        euLysGluLysLeuProPheProSerAspAsnProThrAlaLeuMetThrAspProLysPhe
 7563 : TCAAGGAGAAGCTTCCCTTCCCCAGCGACAACCCTACGGCCTTGATGACCGACCCCAAGTTC : 7504

  141 : IleIleTrpSerProValCysArgAsnAspIleSerTrpAsnPheGluLysPheLeuIleGl :  161
        ||||||||||||||||||||||||||||||:!!|||||||||||||||||||||||||||||
        IleIleTrpSerProValCysArgAsnAspValSerTrpAsnPheGluLysPheLeuIleGl
 7503 : ATCATCTGGAGTCCCGTGTGCAGGAACGACGTCTCCTGGAACTTTGAGAAGTTCCTCATCGG : 7441

  162 : yProAspGlyGluProPheLysArgTyrSerArgArgPheLeuThrIleAspIleAspAlaA :  182
        ||||||||||:!!|||||||||||||||||||||!!!|||||||||! !||||||!!:||||
        yProAspGlyLysProPheLysArgTyrSerArgSerPheLeuThrSerAspIleGluAlaA
 7440 : CCCCGATGGGAAACCGTTCAAGCGCTACAGCAGGAGCTTCCTGACCAGCGATATCGAGGCTG : 7378

  183 : spIleLysGluLeuLeuLysArgThrLys :  191
        ||||||||||||||||||||!.!..!|||
        spIleLysGluLeuLeuLysAsnValLys
 7377 : ACATCAAAGAGCTCCTCAAGAACGTGAAG : 7349

vulgar: SPP00000624_2.0 5 191 . CM004434.1:subseq(2080000,150000) 8520 7348 - 821 M 70 210 5 0 2 I 0 610 3 0 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004434.1:subseq(2080000,150000)	exonerate:protein2genome:local	gene	7349	8520	821	-	.	gene_id 1 ; sequence SPP00000624_2.0 ; gene_orientation +
CM004434.1:subseq(2080000,150000)	exonerate:protein2genome:local	cds	8311	8520	.	-	.	
CM004434.1:subseq(2080000,150000)	exonerate:protein2genome:local	exon	8311	8520	.	-	.	insertions 0 ; deletions 0
CM004434.1:subseq(2080000,150000)	exonerate:protein2genome:local	splice5	8309	8310	.	-	.	intron_id 1 ; splice_site "GT"
CM004434.1:subseq(2080000,150000)	exonerate:protein2genome:local	intron	7697	8310	.	-	.	intron_id 1
CM004434.1:subseq(2080000,150000)	exonerate:protein2genome:local	splice3	7697	7698	.	-	.	intron_id 0 ; splice_site "aG"
CM004434.1:subseq(2080000,150000)	exonerate:protein2genome:local	cds	7349	7696	.	-	.	
CM004434.1:subseq(2080000,150000)	exonerate:protein2genome:local	exon	7349	7696	.	-	.	insertions 0 ; deletions 0
CM004434.1:subseq(2080000,150000)	exonerate:protein2genome:local	similarity	7349	8520	821	-	.	alignment_id 1 ; Query SPP00000624_2.0 ; Align 8521 6 210 ; Align 7697 76 348
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis