Command line: [exonerate -m p2g --showtargetgff -q gpx1a.fa -t genomic.fa]
Hostname: [ws101183u]

C4 Alignment:
------------
         Query: SPP00000621_2.0 # Protein # Glutathione peroxidase 1a (GPx1a) # Zebrafish 
        Target: CM004424.1:subseq(15520000,150000) Ictalurus punctatus breed USDA103 chromosome 11, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 834
   Query range: 4 -> 190
  Target range: 3229 -> 5291

    5 : LysSerPheTyrAspIleThrAlaLysThrLeuThrGlyGluGluPheLysPheSerSerLe :   25
        |||||||||||||||:!!:!!!.!|||||||||||||||||||||!!.|||!!.|||!!!||
        LysSerPheTyrAspLeuSerValLysThrLeuThrGlyGluGluLeuLysLeuSerCysLe
 3230 : AAGTCGTTTTACGACCTCTCGGTGAAGACGCTGACAGGAGAGGAGTTGAAGTTGTCGTGTTT : 3290

   26 : uGlnGlyLysValValLeuIleGluAsnValAlaSerLeuUnkGlyThrThrSerArgAspT :   46
        ||||||||||||||||||||||||||||||||||||||||   |||||||||!!!|||||||
        uGlnGlyLysValValLeuIleGluAsnValAlaSerLeu***GlyThrThrThrArgAspT
 3291 : ACAGGGTAAGGTAGTCCTGATCGAGAACGTTGCGTCTCTCTGAGGCACGACCACCAGGGATT : 3353

   47 : yrThrGlnMetAsnGluLeuHisGluArgPheAlaGluLysGlyLeuValValLeuGlyVal :   66
        |||||||||||||||||||||||||||||||||||! !:!!|||||||||:!!|||||||||
        yrThrGlnMetAsnGluLeuHisGluArgPheAlaAlaGluGlyLeuValIleLeuGlyVal
 3354 : ACACCCAGATGAACGAGCTCCATGAGCGCTTCGCCGCGGAGGGACTCGTCATTCTGGGGGTG : 3413

   67 : ProCysAsnGlnPheGlyTyrGln  >>>> Target Intron 1 >>>>  GluAsnCys :   77
        ||||||||||||||||||:!!|||           1504 bp           |||||||||
        ProCysAsnGlnPheGlyHisGln++                         ++GluAsnCys
 3414 : CCCTGCAACCAGTTTGGCCATCAGgt.........................aggaaaactgT : 4950

   78 : ThrAsnGluGluIleLeuLeuSerLeuLysTyrValArgProGlyAsnGlyTyrGluProLy :   98
        ! !|||||||||||||||:!!||||||||||||:!!|||||||||||||||!:!||||||||
        LysAsnGluGluIleLeuValSerLeuLysTyrIleArgProGlyAsnGlyPheGluProLy
 4951 : AAAAACGAGGAGATCCTGGTGTCGCTGAAATACATCCGTCCTGGAAATGGCTTCGAACCAAA : 5013

   99 : sPheGlnLeuLeuGluLysValAspValAsnGlyLysAsnAlaHisProLeuPheThrPheL :  119
        |||||||||||||||||||||||||||||||||||||:!!|||||||||||||||..!||||
        sPheGlnLeuLeuGluLysValAspValAsnGlyLysAspAlaHisProLeuPheValPheL
 5014 : ATTCCAGCTCTTGGAGAAGGTCGATGTGAACGGGAAAGACGCTCACCCGCTGTTTGTCTTTC : 5076

  120 : euLysGluLysLeuProPheProSerAspGluProMetProPheMetSerAspProLysPhe :  139
        |||||||||||||||||||||||||||||||||||! ! !!!!.|||.!!|||||||||! !
        euLysGluLysLeuProPheProSerAspGluProThrAlaLeuMetGlyAspProLysCys
 5077 : TCAAGGAGAAGCTTCCTTTCCCAAGCGATGAGCCGACGGCATTAATGGGCGACCCCAAATGC : 5136

  140 : IleIleTrpSerProValCysArgAsnAspIleAlaTrpAsnPheGluLysPheLeuIleGl :  160
        |||||||||||||||||||||||||||||||||:!!||||||||||||||||||||||||||
        IleIleTrpSerProValCysArgAsnAspIleSerTrpAsnPheGluLysPheLeuIleGl
 5137 : ATCATCTGGAGTCCTGTGTGCAGAAACGACATCTCCTGGAACTTTGAGAAGTTCCTTATCGG : 5199

  161 : ySerAspGlyValProPheLysArgTyrSerArgArgPheLeuThrSerGlyIleAspGlyA :  181
        | !!|||||||||||||||||||||||||||||||||!:!||||||:!!! !|||!!:||||
        yProAspGlyValProPheLysArgTyrSerArgArgTyrLeuThrAlaAspIleGluGlyA
 5200 : CCCAGATGGCGTCCCATTCAAGCGTTACAGCAGAAGATACCTGACCGCTGACATAGAGGGAG : 5262

  182 : spIleLysLysLeuLeuSerIleProLys :  190
        |||||||||||||||||.!!||| !!|||
        spIleLysLysLeuLeuGlyIleAlaLys
 5263 : ACATAAAGAAGCTTCTGGGCATTGCCAAA : 5291

vulgar: SPP00000621_2.0 4 190 . CM004424.1:subseq(15520000,150000) 3229 5291 + 834 M 70 210 5 0 2 I 0 1500 3 0 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004424.1:subseq(15520000,150000)	exonerate:protein2genome:local	gene	3230	5291	834	+	.	gene_id 1 ; sequence SPP00000621_2.0 ; gene_orientation +
CM004424.1:subseq(15520000,150000)	exonerate:protein2genome:local	cds	3230	3439	.	+	.	
CM004424.1:subseq(15520000,150000)	exonerate:protein2genome:local	exon	3230	3439	.	+	.	insertions 0 ; deletions 0
CM004424.1:subseq(15520000,150000)	exonerate:protein2genome:local	splice5	3440	3441	.	+	.	intron_id 1 ; splice_site "GT"
CM004424.1:subseq(15520000,150000)	exonerate:protein2genome:local	intron	3440	4943	.	+	.	intron_id 1
CM004424.1:subseq(15520000,150000)	exonerate:protein2genome:local	splice3	4942	4943	.	+	.	intron_id 0 ; splice_site "ag"
CM004424.1:subseq(15520000,150000)	exonerate:protein2genome:local	cds	4944	5291	.	+	.	
CM004424.1:subseq(15520000,150000)	exonerate:protein2genome:local	exon	4944	5291	.	+	.	insertions 0 ; deletions 0
CM004424.1:subseq(15520000,150000)	exonerate:protein2genome:local	similarity	3230	5291	834	+	.	alignment_id 1 ; Query SPP00000621_2.0 ; Align 3230 5 210 ; Align 4944 75 348
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis