Command line: [exonerate -m p2g --showtargetgff -q DOI2/DOI2_x.fa -t DOI2/SUBSEQ/CM004422.1_1_subseq.txt --exhaustive]
Hostname: [ws101122u]

C4 Alignment:
------------
         Query: SPP00000614_2.0  Protein  Iodothyronine deiodinase 2 (DIO2)  Zebrafish 
        Target: CM004422.1:subseq(2552067,25233) Ictalurus punctatus breed USDA103 chromosome 9, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1062
   Query range: 0 -> 257
  Target range: 25233 -> 21137

     1 : MetGlyLeuLeuSerValAspLeuLeuValThrLeuGlnIleLeuProGlyPhePheSer :    20
         ||||||:!!||||||!.!||||||! !|||||||||||||||||||||||||||||||||
         MetGlyValLeuSerAlaAspLeuArgValThrLeuGlnIleLeuProGlyPhePheSer
 25233 : ATGGGAGTGCTCAGCGCGGACCTGCGGGTCACCCTGCAGATTCTACCCGGCTTCTTCTCC : 25176

    21 : AsnCysLeuPhePheValLeuTyrAspSerIleValLeuValLysArgValValSerLeu :    40
         ||||||||||||||||||||||||||||||:!!|||||||||||||||||||||||||||
         AsnCysLeuPhePheValLeuTyrAspSerValValLeuValLysArgValValSerLeu
 25175 : AACTGCCTGTTCTTCGTGCTCTACGACTCGGTAGTGCTCGTGAAGCGCGTCGTGTCGCTC : 25116

    41 : <-><->LeuSerCysSerGlySerThrGlyGluTrp<->GlnArgMetLeuThrThrAla :    57
               |||||||||...|||...   |||   |||   |||||||||||||||:!!|||
         ValSerLeuSerCysGlyGlyGlyGlyGlyAlaTrpGlnGlnArgMetLeuThrSerAla
 25115 : GTGAGCCTCTCgtgcggcggcggcggcggcgcgTGGCAGCAGCGCATGTTGACCTCGGCC : 25056

    58 : GlyValArgSerIleTrpAsnSerPheLeuLeuAspAlaTyrLysGln  >>>> Targe :    74
         ||||||||||||||||||||||||||||||||||||||||||||||||           3
         GlyValArgSerIleTrpAsnSerPheLeuLeuAspAlaTyrLysGln++          
 25055 : GGCGTGCGCTCCATCTGGAACAGCTTTCTGCTGGACGCCTATAAGCAGgt.......... : 25003

    75 : t Intron 1 >>>>  ValLysLeuGlyGluAlaAlaProAsnSerLysValValLysV :    88
         310 bp           |||||||||||||||||||||||||||||||||||||||||||
                        ++ValLysLeuGlyGluAlaAlaProAsnSerLysValValLysV
 25002 : ...............agGTGAAATTGGGCGAGGCGGCTCCGAACTCTAAAGTGGTGAAGG : 21653

    89 : alThrGlyIleAsnArgCys<->TrpSerIle<->SerGlyLysThrHisAsnGlnCysH :   106
         || !!||||||::! !!|||   ||||||! !   ..!|||||||||   :!!:!!|||!
         alProGlyIleSerGlyCysGlnTrpSerSerGluAspGlyLysThrThrAspGluCysA
 21652 : TTCCCGGGATCTCCGGCTGCCAGTGGAGCAGCGAGGATGGAAAGACGACGGACGAGTGTC : 21593

   107 : isLeuLeuAspPheGluSerProAspArgProLeuValValAsnPheGlySerAlaThrU :   126
         .!|||||||||||||||||| !!|||||||||||||||||||||||||||||||||!:! 
         rgLeuLeuAspPheGluSerSerAspArgProLeuValValAsnPheGlySerAlaSer*
 21592 : GCCTGTTGGACTTTGAATCGTCCGATCGGCCCTTGGTGGTCAACTTCGGCTCGGCCAGCT : 21533

   127 : nkProProPheIleSerGlnLeuProValPheArgArgMetValGluGluPheSerAspV :   146
           |||||||||:!:!:!|||||||||||||||||||||:!!||||||.!.||||||||||
         **ProProPheValAsnGlnLeuProValPheArgArgLeuValGluAsnPheSerAspV
 21532 : GACCCCCGTTCGTGAACCAGCTGCCGGTCTTCCGGAGGCTGGTGGAGAACTTCTCGGACG : 21473

   147 : alAlaAspPheLeuLeuValTyrIleAspGluAlaHisProSerAspGlyTrpValGlyP :   166
         |||||||||||||||||||||||||||||||||||||||||||||||||||||!.!||||
         alAlaAspPheLeuLeuValTyrIleAspGluAlaHisProSerAspGlyTrpAlaGlyP
 21472 : TGGCGGACTTCCTGCTCGTCTACATCGACGAGGCTCACCCGTCTGACGGATGGGCGGGCC : 21413

   167 : roProMetGluAsnPheSerPheGluValArgLysHisArgAsnLeuGluGluArgMetP :   186
         |||||||||||  !||| !!|||||||||!:!|||||||||!:!||||||||||||:!! 
         roProMetGluLeuPheProPheGluValLysLysHisArgSerLeuGluGluArgLeuV
 21412 : CACCCATGGAACTTTTCCCGTTCGAGGTGAAGAAACACCGCAGCTTGGAGGAGCGCCTGG : 21353

   187 : heAlaAlaArgThrLeuLeuGluHisPheSerLeuProProGlnCysGlnLeuValAlaA :   206
         ! ||||||!:!! !|||:!!|||||||||||||||||||||||||||!:!|||!.!||||
         alAlaAlaGlnArgLeuValGluHisPheSerLeuProProGlnCysArgLeuAlaAlaA
 21352 : TGGCGGCGCAGAGGCTCGTCGAGCATTTCTCTCTGCCGCCGCAGTGCCGGCTGGCGGCCG : 21293

   207 : spCysMetAspAsnAsnAlaAsnIleAlaTyrGlyValSerTyrGluArgValCysIleV :   226
         |||||||||||||||||||||||!!:||||||||||||:!!|||||||||||||||||||
         spCysMetAspAsnAsnAlaAsnMetAlaTyrGlyValAlaTyrGluArgValCysIleV
 21292 : ACTGCATGGACAACAACGCCAACATGGCGTACGGCGTCGCCTACGAAAGGGTGTGCATCG : 21233

   227 : alGlnLysAsnLysIleAlaTyrLeuGlyGlyLysGlyProPhePheTyrAsnLeuLysA :   246
         |||||||||||||||||.!!||||||||||||||||||||||||!:!|||||||||||||
         alGlnLysAsnLysIleThrTyrLeuGlyGlyLysGlyProPheTyrTyrAsnLeuLysA
 21232 : TACAGAAGAATAAAATCACGTATCTGGGAGGGAAGGGTCCGTTTTATTACAACCTTAAAG : 21173

   247 : spValArgArgTrpLeuGluLysCysTyrGlyLys :   257
         |||||!:!!.!|||||||||::! !!|||||||||
         spValGlnAsnTrpLeuGluArgSerTyrGlyLys
 21172 : ATGTACAGAACTGGCTTGAACGGAGCTACGGGAAG : 21138

vulgar: SPP00000614_2.0 0 257 . CM004422.1:subseq(2552067,25233) 25233 21137 - 1062 M 40 120 G 0 6 M 10 30 G 0 3 M 23 69 5 0 2 I 0 3306 3 0 2 M 21 63 G 0 3 M 3 9 G 0 3 M 160 480
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004422.1:subseq(2552067,25233)	exonerate:protein2genome:local	gene	21138	25233	1062	-	.	gene_id 1 ; sequence SPP00000614_2.0 ; gene_orientation +
CM004422.1:subseq(2552067,25233)	exonerate:protein2genome:local	cds	25006	25233	.	-	.	
CM004422.1:subseq(2552067,25233)	exonerate:protein2genome:local	exon	25006	25233	.	-	.	insertions 9 ; deletions 0
CM004422.1:subseq(2552067,25233)	exonerate:protein2genome:local	splice5	25004	25005	.	-	.	intron_id 1 ; splice_site "GT"
CM004422.1:subseq(2552067,25233)	exonerate:protein2genome:local	intron	21696	25005	.	-	.	intron_id 1
CM004422.1:subseq(2552067,25233)	exonerate:protein2genome:local	splice3	21696	21697	.	-	.	intron_id 0 ; splice_site "AG"
CM004422.1:subseq(2552067,25233)	exonerate:protein2genome:local	cds	21138	21695	.	-	.	
CM004422.1:subseq(2552067,25233)	exonerate:protein2genome:local	exon	21138	21695	.	-	.	insertions 6 ; deletions 0
CM004422.1:subseq(2552067,25233)	exonerate:protein2genome:local	similarity	21138	25233	1062	-	.	alignment_id 1 ; Query SPP00000614_2.0 ; Align 25234 1 120 ; Align 25108 41 30 ; Align 25075 51 69 ; Align 21696 74 63 ; Align 21630 95 9 ; Align 21618 98 480
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis