Command line: [exonerate -m p2g --showtargetgff -q DIO1.fa -t genomic.fa]
Hostname: [ws101087U]

C4 Alignment:
------------
         Query: tr|D3Y4D3|D3Y4D3_DANRE Iodothyronine deiodinase OS=Danio rerio PE=2 SV=1
        Target: CM004438.1:subseq(17080000,150000) Ictalurus punctatus breed USDA103 chromosome 25, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 933
   Query range: 11 -> 264
  Target range: 4805 -> 4052

   12 : SerAlaLeuLysAsnAlaAlaValCysValLeuLeuLeuProArgPheLeuLeuAlaAlaLe :   32
        !.!|||||||||||||||  !|||! !:!!:!!|||||||||||||||||||||.!!|||:!
        LysAlaLeuLysAsnAlaLeuValSerLeuMetLeuLeuProArgPheLeuLeuThrAlaVa
 4805 : AAAGCGCTCAAAAACGCGCTGGTGTCCCTGATGCTGCTGCCGCGCTTCCTGCTGACCGCCGT : 4745

   33 : uMetLeuCysLeuLeuAspPheLeuCysIleArgArgLysLeuLeuLeuLysMetGlnGluG :   53
        !:!!|||!! !!!|||||||||:!!|||||||||||||||:!!|||:!!||||||!::||| 
        lLeuLeuTrpPheLeuAspPheValCysIleArgArgLysValLeuValLysMetArgGluA
 4744 : GCTGCTGTGGTTTCTCGACTTCGTCTGCATCCGACGGAAGGTGCTGGTGAAGATGCGCGAAC : 4682

   54 : lyAlaPheSerSerProAspAspProProLeuArgValSerAspSerAsnLysMetPheThr :   73
        !!! !  !|||||||||||||||||| !!:!!! !|||||||||||||||::!|||||||||
        rgGluGlySerSerProAspAspProSerValThrValSerAspSerAsnArgMetPheThr
 4681 : GCGAGGGCTCGAGTCCCGACGACCCGTCGGTGACGGTGTCAGACTCCAACCGGATGTTCACG : 4622

   74 : LeuGluSerLeuArgAlaValTrpTyrGlyGlnLysLeuAspPhePheLysSerAlaArgLe :   94
        :!!||||||||||||||||||||||||.!!|||||||||||||||! !|||:!!|||!.!||
        ValGluSerLeuArgAlaValTrpTyrSerGlnLysLeuAspPheCysLysAlaAlaHisLe
 4621 : GTGGAGTCACTGCGCGCCGTGTGGTACAGCCAGAAGTTGGACTTCTGCAAGGCGGCGCACCT : 4559

   95 : uGlyGlyAlaAlaProAsnThrGluValPheProLeuAspGlyAspAlaArgAlaAlaGluA :  115
        ||||  !.!!|||||||||!:!|||||| ! ||||||   ||||||  !!:!  !|||   |
        uGlyLeuThrAlaProAsnSerGluValValProLeu---GlyAspArgLysArgAla---A
 4558 : GGGGCTGACGGCGCCCAACAGCGAGGTGGTACCGCTC---GGCGATCGGAAACGCGCG---C : 4502

  116 : rgIleLeuAspTyrAlaArgGlyArgArgProLeuIleLeuAsnPheGlySerCysSerUnk :  135
        |||||||||||||||||||||||  !|||||||||||||||||||||||||||||||||   
        rgIleLeuAspTyrAlaArgGlySerArgProLeuIleLeuAsnPheGlySerCysSer***
 4501 : GCATACTGGACTACGCCCGCGGCTCGAGACCGCTCATCCTTAACTTCGGCAGCTGCTCATGA : 4442

  136 : ProProPheMetThrArgLeuSerAlaPheGlnArgValAlaArgGlnTyrAlaAspIleAl :  156
        |||||||||||||||||||||:!!||||||!:!|||||||||  !|||||||||||||||||
        ProProPheMetThrArgLeuAlaAlaPheArgArgValAlaAspGlnTyrAlaAspIleAl
 4441 : CCACCGTTCATGACGCGCCTGGCCGCGTTCCGGCGCGTTGCTGACCAGTACGCCGACATCGC : 4379

  157 : aAspSerLeuLeuValTyrIleGluGluAlaHisProProAspGlyTrpValSerSerAspA :  177
        |||||||||||||:!!||||||||||||||||||||| !!|||||||||||||||!!!||||
        aAspSerLeuLeuIleTyrIleGluGluAlaHisProSerAspGlyTrpValSerThrAspA
 4378 : CGACTCACTGCTTATATACATCGAGGAGGCGCATCCGTCCGACGGCTGGGTGAGCACGGACG : 4316

  178 : laProValGlnIleProArgHisArgCysLeuGluAspArgLeuArgAlaAlaGlnMetLeu :  197
        |||||  !|||||||||||||||||||||:!!:!!||||||||||||||||||!:::!::!!
        laProTyrGlnIleProArgHisArgCysIleLysAspArgLeuArgAlaAlaArgLeuMet
 4315 : CCCCGTACCAGATCCCACGCCACCGCTGTATAAAGGACCGTCTCCGAGCCGCGCGCCTCATG : 4256

  198 : HisArgGluAlaAlaGlySerAlaValValValAspSerMetGlnAsnSerCysAsnAlaAl :  218
          !  !  !!.! !!||||||  !||||||||||||!!!|||.!.||||||! !||||||||
        ThrAlaThrValProGlySerIleValValValAspThrMetAspAsnSerSerAsnAlaAl
 4255 : ACCGCCACGGTACCAGGCAGCATCGTGGTCGTGGACACCATGGACAACTCGTCCAACGCGGC : 4193

  219 : aTyrGlyAlaTyrPheGluArgLeuTyrIleValLysAspAlaAlaValValTyrGlnGlyG :  239
        ||||||||||||||||||||||||||||:!:|||||||||! !  !||||||||||||||||
        aTyrGlyAlaTyrPheGluArgLeuTyrValValLysAspGluLysValValTyrGlnGlyG
 4192 : GTACGGAGCCTACTTCGAGCGGCTCTACGTGGTCAAGGACGAGAAGGTGGTGTATCAGGGAG : 4130

  240 : lyArgGlyProGluGlyTyrArgIleAlaGluLeuArgAspTrpLeuGluArgTyrArgSer :  259
        ||||||||||||||||||||||||||:!!|||||||||:!!|||||||||!:!||||||..!
        lyArgGlyProGluGlyTyrArgIleSerGluLeuArgAsnTrpLeuGluGlnTyrArgGln
 4129 : GCCGGGGACCCGAGGGCTACCGCATTTCCGAACTGAGGAACTGGCTCGAGCAATATCGCCAA : 4070

  260 : GlyLeuGlnGluSer :  264
          !|||:!!!  |||
        LysLeuGluGlySer
 4069 : AAGCTCGAAGGCTCC : 4053

vulgar: tr|D3Y4D3|D3Y4D3_DANRE 11 264 . CM004438.1:subseq(17080000,150000) 4805 4052 - 933 M 95 285 G 1 0 M 6 18 G 1 0 M 150 450
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004438.1:subseq(17080000,150000)	exonerate:protein2genome:local	gene	4053	4805	933	-	.	gene_id 1 ; sequence tr|D3Y4D3|D3Y4D3_DANRE ; gene_orientation .
CM004438.1:subseq(17080000,150000)	exonerate:protein2genome:local	cds	4053	4805	.	-	.	
CM004438.1:subseq(17080000,150000)	exonerate:protein2genome:local	exon	4053	4805	.	-	.	insertions 0 ; deletions 2
CM004438.1:subseq(17080000,150000)	exonerate:protein2genome:local	similarity	4053	4805	933	-	.	alignment_id 1 ; Query tr|D3Y4D3|D3Y4D3_DANRE ; Align 4806 12 285 ; Align 4521 108 18 ; Align 4503 115 450
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis