Command line: [exonerate -m p2g --showtargetgff -q SEPHSm/SEPHSm_x.fa -t SEPHSm/SUBSEQ/CM004417.1_5_subseq.txt --exhaustive] Hostname: [ws101122u] C4 Alignment: ------------ Query: SPP00000629_2.0 Protein Selenophosphate synthetase (SEPHS) Zebrafish Target: CM004417.1:subseq(27561815,25233) Ictalurus punctatus breed USDA103 chromosome 4, whole genome shotgun sequence Model: protein2genome:local Raw score: 1913 Query range: 0 -> 385 Target range: 21273 -> 25233 1 : MetSerValArgGluSerPheAsnProGluSerTyrGluLeuAspLysAsnPheArgLeu : 20 |||||||||||||||:!!|||||||||||||||||||||||||||||||||||||||||| MetSerValArgGluAlaPheAsnProGluSerTyrGluLeuAspLysAsnPheArgLeu 21274 : ATGTCAGTGCGGGAGGCTTTTAACCCAGAGAGTTACGAGTTGGACAAGAACTTCAGACTA : 21331 21 : ThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGlnLys : 40 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGlnLys 21332 : ACACGCTTCACAGAGCTTAAAGGGACCGGCTGCAAAGTCCCTCAGGATGTGCTTCAGAAA : 21391 41 : LeuLeuGluSerLeuGlnGluAsnHisTyrGlnGluAspGluGlnPheLeuGlyAlaVal : 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LeuLeuGluSerLeuGlnGluAsnHisTyrGlnGluAspGluGlnPheLeuGlyAlaVal 21392 : CTTCTGGAGTCGTTGCAGGAGAACCATTATCAGGAGGATGAGCAGTTCCTCGGGGCAGTT : 21451 61 : MetProArgLeu{G} >>>> Target Intron 1 >>>> {ly}IleGlyMetAsp : 69 ||||||||||||{|} 464 bp {||}|||||||||||| MetProArgLeu{G}++ ++{ly}IleGlyMetAsp 21452 : ATGCCCAGACTG{G}gt.........................ag{GC}ATCGGCATGGAC : 21942 70 : ThrCysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspTyrIle : 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ThrCysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspTyrIle 21943 : ACCTGTGTGATTCCTCTGAGACACGGTGGCCTTTCGCTAGTACAGACCACAGACTACATC : 22002 90 : TyrProIleValAspAspProTyrMetMet >>>> Target Intron 2 >>>> G : 100 |||||||||||||||||||||||||||||| 307 bp | TyrProIleValAspAspProTyrMetMet++ ++G 22003 : TACCCTATAGTGGACGACCCTTACATGATGgt.........................agG : 22342 101 : lyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyValThrGluCysA : 120 |||||:!!|||||||||||||||||||||||||||||||||||||||||||||||||||| lyArgValAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyValThrGluCysA 22343 : GCAGAGTTGCGTGTGCTAACGTCTTGAGTGACCTGTACGCTATGGGAGTGACCGAGTGTG : 22402 121 : spAsnMetLeuMetLeuLeuGlyValSerAsnLysLeuThrGluLys >>>> Target : 136 ||||||||||||||||||||||||||||||||||||||:!!|||||| 8 spAsnMetLeuMetLeuLeuGlyValSerAsnLysLeuSerGluLys++ 22403 : ATAACATGTTGATGTTGCTGGGCGTTAGTAACAAACTGTCCGAAAAGgt........... : 22452 137 : Intron 3 >>>> GluArgAspLysValMetProLeuValIleGlnGlyPheLysAs : 150 9 bp ||||||||||||||||||||||||:!!||||||||||||||||| ++GluArgAspLysValMetProLeuIleIleGlnGlyPheLysAs 22453 : ..............agGAAAGGGACAAGGTGATGCCGCTTATTATCCAAGGTTTTAAGGA : 22581 151 : pAlaSerGluGluAlaGlyThrSerValThrGlyGlyGlnThrValIleAsnProTrpIl : 170 ||||:!!|||||||||||||||||||||||||||||||||||||||:!:||||||||||| pAlaAlaGluGluAlaGlyThrSerValThrGlyGlyGlnThrValValAsnProTrpIl 22582 : TGCAGCAGAGGAGGCGGGAACCTCTGTGACCGGTGGTCAGACAGTTGTGAACCCCTGGAT : 22641 171 : eValLeuGlyGlyValAlaThrThrValCysGlnProAsnGluPheIle{Me} >>>> : 187 |||||||||||||||||||||||||||||||||||||||||||||||||{||} eValLeuGlyGlyValAlaThrThrValCysGlnProAsnGluPheIle{Me}++ 22642 : CGTACTTGGAGGTGTGGCCACAACAGTCTGTCAACCTAACGAGTTCATC{At}gt..... : 22696 188 : Target Intron 4 >>>> {t}ProAspAsnAlaValProGlyAspValLeuValLe : 199 97 bp {|}||||||||||||||||||||||||||||||||||| ++{t}ProAspAsnAlaValProGlyAspValLeuValLe 22697 : ....................ag{G}CCAGATAATGCAGTGCCAGGTGACGTGTTGGTTCT : 22825 200 : uThrLysProLeuGlyThrGlnValAlaValAlaValHisGlnTrpLeuAspIle >>> : 218 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| uThrLysProLeuGlyThrGlnValAlaValAlaValHisGlnTrpLeuAspIle++ 22826 : CACCAAACCTCTCGGCACTCAAGTAGCAGTCGCAGTGCATCAATGGCTGGACATCgt... : 22884 219 : > Target Intron 5 >>>> ProGluLysTrpAsnLysIleLysLeuValValThr : 229 619 bp |||||||||||||||||||||||||||||||||||| ++ProGluLysTrpAsnLysIleLysLeuValValThr 22885 : ......................agCCAGAGAAATGGAACAAGATCAAGTTAGTAGTGACA : 23534 230 : GlnGluAspValGluLeuAlaTyrGlnGluAlaMetLeuAsnMetAlaArgLeuAsnArg : 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnGluAspValGluLeuAlaTyrGlnGluAlaMetLeuAsnMetAlaArgLeuAsnArg 23535 : CAAGAGGATGTGGAGCTAGCATATCAGGAGGCTATGTTGAACATGGCCAGACTCAACAGA : 23594 250 : Thr{A} >>>> Target Intron 6 >>>> {la}AlaGlyLeuMetHisThrPhe : 258 |||{|} 85 bp {||}||||||||||||||||||||| Thr{A}++ ++{la}AlaGlyLeuMetHisThrPhe 23595 : ACA{G}gt.........................ag{CG}GCAGGTCTGATGCACACGTTC : 23706 259 : AsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisAlaGlnAsnLeu : 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| AsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisAlaGlnAsnLeu 23707 : AACGCACACGCTGCCACAGACATCACAGGCTTTGGTATTTTGGGTCATGCTCAGAACCTC : 23766 279 : AlaArgGlnGlnArgThrGluValSerPheValIleHisAsnLeuProValLeuAlaLys : 298 |||||||||||||||!:!|||||||||||||||||||||||||||||||||||||||||| AlaArgGlnGlnArgSerGluValSerPheValIleHisAsnLeuProValLeuAlaLys 23767 : GCAAGACAGCAGCGCAGCGAGGTCTCCTTCGTCATCCACAACCTACCCGTCCTCGCCAAG : 23826 299 : MetAlaAlaValSerLysAlaCysGlyAsnMetPheGlyLeuMetHisGlyThrCysPro : 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| MetAlaAlaValSerLysAlaCysGlyAsnMetPheGlyLeuMetHisGlyThrCysPro 23827 : ATGGCCGCCGTCAGCAAAGCCTGCGGGAACATGTTCGGTTTAATGCACGGCACCTGCCCC : 23886 319 : GluThrSer{G} >>>> Target Intron 7 >>>> {ly}GlyLeuLeuIleCys : 327 |||||||||{|} 1144 bp {||}||||||||||||||| GluThrSer{G}++ ++{ly}GlyLeuLeuIleCys 23887 : GAGACCTCA{G}gt.........................ag{GA}GGCCTGCTGATCTGT : 25057 328 : LeuProArgGluGlnAlaAlaArgPheCysAlaGluIleLysSerProLysTyrGlyGlu : 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LeuProArgGluGlnAlaAlaArgPheCysAlaGluIleLysSerProLysTyrGlyGlu 25058 : CTTCCACGTGAACAAGCTGCTCGCTTCTGCGCCGAGATCAAATCTCCGAAATACGGCGAG : 25117 348 : GlyHisGlnAlaTrpIleIleGlyIleValGluLysGlyAsnArgThrAlaArgIleIle : 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlyHisGlnAlaTrpIleIleGlyIleValGluLysGlyAsnArgThrAlaArgIleIle 25118 : GGCCACCAGGCCTGGATCATCGGCATCGTAGAGAAAGGCAACCGCACAGCTCGGATCATC : 25177 368 : AspLysProArgIleIleGluValAlaProGlnValAlaThrGlnAsnValAsn : 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||| AspLysProArgIleIleGluValAlaProGlnValAlaThrGlnAsnValAsn 25178 : GACAAACCCCGCATCATCGAGGTCGCGCCCCAGGTGGCCACGCAGAACGTCAAC : 25233 vulgar: SPP00000629_2.0 0 385 . CM004417.1:subseq(27561815,25233) 21273 25233 + 1913 M 64 192 S 0 1 5 0 2 I 0 460 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 36 108 5 0 2 I 0 85 3 0 2 M 51 153 S 0 2 5 0 2 I 0 93 3 0 2 S 1 1 M 30 90 5 0 2 I 0 615 3 0 2 M 33 99 S 0 1 5 0 2 I 0 81 3 0 2 S 1 2 M 70 210 S 0 1 5 0 2 I 0 1140 3 0 2 S 1 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local gene 21274 25233 1913 + . gene_id 1 ; sequence SPP00000629_2.0 ; gene_orientation + CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local cds 21274 21466 . + . CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local exon 21274 21466 . + . insertions 0 ; deletions 0 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice5 21467 21468 . + . intron_id 1 ; splice_site "GT" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local intron 21467 21930 . + . intron_id 1 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice3 21929 21930 . + . intron_id 0 ; splice_site "AG" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local cds 21931 22034 . + . CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local exon 21931 22034 . + . insertions 0 ; deletions 0 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice5 22035 22036 . + . intron_id 2 ; splice_site "GT" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local intron 22035 22341 . + . intron_id 2 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice3 22340 22341 . + . intron_id 1 ; splice_site "AG" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local cds 22342 22449 . + . CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local exon 22342 22449 . + . insertions 0 ; deletions 0 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice5 22450 22451 . + . intron_id 3 ; splice_site "GT" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local intron 22450 22538 . + . intron_id 3 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice3 22537 22538 . + . intron_id 2 ; splice_site "AG" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local cds 22539 22693 . + . CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local exon 22539 22693 . + . insertions 0 ; deletions 0 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice5 22694 22695 . + . intron_id 4 ; splice_site "gt" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local intron 22694 22790 . + . intron_id 4 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice3 22789 22790 . + . intron_id 3 ; splice_site "ag" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local cds 22791 22881 . + . CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local exon 22791 22881 . + . insertions 0 ; deletions 0 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice5 22882 22883 . + . intron_id 5 ; splice_site "GT" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local intron 22882 23500 . + . intron_id 5 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice3 23499 23500 . + . intron_id 4 ; splice_site "AG" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local cds 23501 23600 . + . CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local exon 23501 23600 . + . insertions 0 ; deletions 0 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice5 23601 23602 . + . intron_id 6 ; splice_site "GT" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local intron 23601 23685 . + . intron_id 6 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice3 23684 23685 . + . intron_id 5 ; splice_site "AG" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local cds 23686 23898 . + . CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local exon 23686 23898 . + . insertions 0 ; deletions 0 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice5 23899 23900 . + . intron_id 7 ; splice_site "GT" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local intron 23899 25042 . + . intron_id 7 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local splice3 25041 25042 . + . intron_id 6 ; splice_site "AG" CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local cds 25043 25233 . + . CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local exon 25043 25233 . + . insertions 0 ; deletions 0 CM004417.1:subseq(27561815,25233) exonerate:protein2genome:local similarity 21274 25233 1913 + . alignment_id 1 ; Query SPP00000629_2.0 ; Align 21274 1 192 ; Align 21933 66 102 ; Align 22342 100 108 ; Align 22539 136 153 ; Align 22792 188 90 ; Align 23501 218 99 ; Align 23688 252 210 ; Align 25045 323 189 # --- END OF GFF DUMP --- # -- completed exonerate analysis