Protein prediction
Predicted by: exonerate Blastx evalue: 8e-17
Query protein: gi|148277083|ref|NP_001080052.1| thioredoxin reductase 2 [Xenopus laevis]
Positions on query: 130-504 Query length: 504

Target name: KQ557204.1:subseq_6586000,126000_
Positions on target: 76668-76748,75805-75867,75104-75174,69718-69826,69442-69616,62779-62915,57359-57454,56042-56134,53480-53551,52094-52191,50903-51029 Strand: -


  Query   KKVKYFNLKANFVDEHCIRGVTKAGKE <---Intron---> TLVTAQNIVIATGGRPKYPTH <---I
          /|||| ||| / /||| /||//||||| <   800bp    > |//||/||||||||||||||  <   6
  Target  RKVKYLNLKGSLLDEHTVRGLSKAGKE                TVLTAKNIVIATGGRPKYPTE      
          aagatcacagaccggcagagcaaggag                agcagaaagagaggccatcag      
          gataatataggttaaactggtgacgaa                cttccaatttccgggcaacca      
          gacatgccactggtacagatgcaaagg                acgccgctgccataaagcgtg      
                                                                                
  
  Query   ntron---> VPGALEYGITSDDLFWLKESPGKT <---Intron---> LVVGASYVSLECAGFLTGIG
          30bp    > /|||/|/||||||/|||//||||| <   5277bp   >   /    |/|||||||||||
  Target            IPGAVEHGITSDDIFWLEKSPGKT                TWLNPD-VALECAGFLTGIG
                    acggggcgaaaggattcgatcgaa                atcacg-ggcgtggtcagag
                    tcgctaagtcgaattgtaaccgac                cgtaca-tctagcgttcgtg
                    ccatggccccctcccggggctga                aggtcac-ttcgtccccaccc
                                                                                
  
  Query   LNTTAMVRSIPLRGFDQ <---Intron---> QMAYLVADYMESHGTKFLWKCTPSHVEKLKNGKLQVT
          |/ | ||||  |||||/ <   101bp    > ||| || ||||//||/|/|/  |  |//|  | ||||
  Target  LDATVMVRSDALRGFDR                QMAGLVTDYMEAYGTRFVWRSVPKRVDRLPLGTLQVT
          tggagagcaggccgtgc                caggcgagtaggtgaatgtatgcaaggacctgaccga
          tacctttggactggtag                atcgttcaatacagcgttggctcagtagtctgctatc
          gccgggttccccgtttg                aggttggtcgattgcgctggctcaagcggggactggg
                                                                                
  
  Query   WKNTQSGKEGVDIYDTVMWAVG <---Intron---> RAAETQYLNLEKVGVKIKPETGKIIVDASEAT
          | /|//|/|  | ||/|/|||| <   6526bp   > || ||/ | |/|/ |//  |||||/|   |/|
  Target  WSDTETGREHRDTYDSVLWAVG                RAPETKTLGLDKLAVQLNQETGKIVVGPDEST
          tagagagagcagatgtgttggg                agcgaaacgcgacggccacgagaagggcggta
          ggacacggaagacaacttgct                ggccacactgtaatctataaacgatttgcaacc
          gcccaccggcaccccggagag                agtcacgctaccggcgaccagggaacacacacc
                                                                                
  
  Query   SVPHIYAIGDITE <---Intron---> GRPELTPTAIAAGKLLAIRLFSGSAELMDYDS <---Intr
          |||//|| ||| | <   5324bp   > |||||||||| |||||| ||   | /||/||/ <   1224
  Target  SVPNVYAFGDIGE                GRPELTPTAIKAGKLLAHRLAGQSTDLMNYDN         
          tgcagtgtggagg                gccgcacagaaggaccgcacggcaagcaatga         
          ctcatactgatga                ggcatcccctacgattcagtcgagcattaaaa         
          ggaccttcacccg                ttaggcatccgaagctccgtccgccctgccct         
                                                                                
  
  Query   on---> VPTTVFTPLEYGCVGISEEEAKERYGDDNIE <---Intron---> VFHAFYKPLEFTVAER
          bp   > | |||||||||||||/|||||/ | | | || <   2490bp   > ||||||||||||||||
  Target         VATTVFTPLEYGCVGLSEEEAERRRGKDGIE                VFHAFYKPLEFTVAER
                 ggaagtaccgtgtggctgggggaacgaggag                gtcgttaccgtagggc
                 tcccttcctaaggtgtcaaacaggggaagta                ttactaactatctcag
                 gccagcctggcccccaagggcggataacgag                tcccccgaaacccagc
                                                                                
  
  Query   DASQCYIK <---Intron---> IICLRKHDQRILGLHLTGPNAGEVIQGFALGIK <---Intron--
          |||/||/| <   1288bp   > /|| |  ||/||||||||||||||||||// // <   1064bp  
  Target  DASRCYVK                VICERGGDQKILGLHLTGPNAGEVIQGFSMSLQ             
          ggacttga                gatgagggcaacgcccagcaggggacgttaatc             
          acgggata                ttgagggaaattgtatcgcacgattagtctgta             
          tccgtcag                tatggaccggtgtgtcttgttagcagactgcg              
                                                                                
  
  Query   -> CGATYPQLMCTVGIHPTCAEEVTKLHITKRSGLDPTVTGCUG
           > |||||| |/ |||||||||||| |/|||||||||||||||||
  Target     CGATYPHLLQTVGIHPTCAEEVVKIHITKRSGLDPTVTGCUG
             tggatcccccaggaccatgggggaacaaactgtgcagagttg
             ggccacattactgtaccgcaattatatcagcgtacctcgggg
            gtacgttcgggcaaccccctgggcgcccagcttgcagccccat
                                                     *