Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: 6e-59
Query protein: gi|941810256|ref|XP_005812333.2| PREDICTED: selenoprotein T2-like [Xiphophorus maculatus]
Positions on query: 2-210 Query length: 210

Target name: KQ557216.1:subseq_706186,102500_
Positions on target: 3-184,1862-1972,2053-2179,2243-2330,2393-2511 Strand: +
Has a Redox Box!


  Query   AEFGSGGLLAALLLFTALTLRDVYVGRSDHRTGAFAETEPESGKPPKAALYSGPVLQFRYC <---Intr
          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| <   1677
  Target  AEFGSGGLLAALLLFTALTLRDVYVGRSDHRTRAFAETEPESGKPPKAALYSGPVLQFRYC         
          ggtgtggccggccctagcatcggtggctgcaacgtggagcgagaccaggcttgcgcctctt         
          catgcggttccttttcctctgatatggcaagcgctcacacaggaccacctacgcttatgag         
          ggctgctgcgtggccacccagtttgcggccaccctaacaggcgacaagggcccagcgtcc          
                                                                                
  
  Query   on---> ISUGYSKVFQEYSQAISQVYPDIRIQGENYPPTPLNR <---Intron---> LVGNLVSYLK
          bp   > ||||||||||||||||||||||||||||||||||||| <    80bp    > ||||||||||
  Target         ISUGYSKVFQEYSQAISQVYPDIRIQGENYPPTPLNR                LVGNLVSYLK
                 attgtaagtcgttcgaacgtcgacacggatccaccaa                cggacgttca
                 tcggagattaaacactgatacatgtagaaacccctag                ttgattcata
                cccacccaccgaccgcccggtaccccgggcctccgcc                ggctcgcccgg
                   *                                                            
  
  Query   LLSILLIISGQNPFPLLGTDTPAVWTWTQNNK <---Intron---> IFSCLMAFFISNMMETHFLSTG
          |||||||||||||||||||||||||||||||| <    63bp    > ||||||||||||||||||||||
  Target  LLSILLIISGQNPFPLLGTDTPAVWTWTQNNK                IFSCLMAFFISNMMETHFLSTG
          cctaccaaagcactcccgagacggtatacaaa                atttcagttaaaaagactctag
          ttctttttggaactcttgcaccctgcgcaaaa                ttcgttctttgattacattccg
          ccccccccctgctcgcttccatatgcgtgccg                ccgtggcccctcgggtccgtga
                                                                                
  
  Query   AFEVTLND <---Intron---> VPVWSKLQSGYVPNIQEMFRILDTHLKMNQADRVTFTSS
          |||||||| <    62bp    > ||||||||||||||||||||||||||||||||||||||/
  Target  AFEVTLND                VPVWSKLQSGYVPNIQEMFRILDTHLKMNQADRVTFTSA
          gtggacag                gcgttacctgtgcaacgatcacgaccaaacggcgatatg
          ctatcta                atctgcatacgatcataattgttacatataacagtctccc
          ccacggc                ctcggcggggtttgccgagcgcccacgggcgcccccccct