Protein prediction
Predicted by: exonerate Blastx evalue: 2e-22
Query protein: gi|941763314|ref|XP_005796046.2| PREDICTED: selenoprotein T1a-like [Xiphophorus maculatus]
Positions on query: 38-194 Query length: 194

Target name: KQ557221.1:subseq_14200000,102256_
Positions on target: 82098-82231,79978-80104,79100-79187,78773-78894 Strand: -


  Query   PLLKFQICISUGYKRVFEEYTQALYQRYPDIRIEGENYLPIPIYR <---Intron---> HVASFLSMF
          |/|     ||||||||||||||||||||||||||||||||||||| <   1993bp   > |||||||||
  Target  PVLLSFCSISUGYKRVFEEYTQALYQRYPDIRIEGENYLPIPIYR                HVASFLSMF
          cgcctttaattgtacgtggtacgttcctcgacagggatccacatc                cggttctat
          ctttctggtcggaagttaaacactaagacatgtagaaatctctag                atccttctt
          ttctcccctcagcgggtggcggcgcggcaccctaggccttacct                attgccgtgc
                    *                                                           
  
  Query   KLLVIGLIIIGRDPFALFGVQAPGIWEWGQQNK <---Intron---> IYACMMVFFFSNMIENQLMST
          ||||||||||||||||||||||||||||||||| <   790bp    > |||||||||||||||||||||
  Target  KLLVIGLIIIGRDPFALFGVQAPGIWEWGQQNK                IYACMMVFFFSNMIENQLMST
          accgagcaaagagctgctggcgcgatgtgccaa                atgtaagtttaaaagactata
          attttgttttggactcttgtaccgtgaggaaaa                tacgttttttgattaaattcc
          agggcagcaccgcattctttacaacgggcgatg                atccgggcccctgtacgagaa
                                                                                
  
  Query   GAFEITLND <---Intron---> VPVWSKLESGHLPSMQQLVQILDNEMKMNVHMNTRTHHHS
          ||||||||| <   205bp    > ||||||||||||||||||||||||||||||||||||||||
  Target  GAFEITLND                VPVWSKLESGHLPSMQQLVQILDNEMKMNVHMNTRTHHHS
          ggtgaatag                gcgttacgtgccctacccgcacgagaaaagcaaaaaccct
          gctatcta                atctgcatacgatcctaattattaaatatatatacgcaaac
          agtacaac                cgagggaaggtccccgaacgacgccggggttcgcaagtccc