Protein prediction
Predicted by: exonerate Blastx evalue: 2e-82
Query protein: gi|941758886|ref|XP_014324509.1| PREDICTED: selenoprotein P [Xiphophorus maculatus]
Positions on query: 1-306 Query length: 306

Target name: KQ557204.1:subseq_22200000,100000_
Positions on target: 57239-57441,56267-56479,56039-56156,55563-55946 Strand: -
Has a Redox Box!


  Query   MWVRLSLLLTLCLLHGGGAESEGGGPRCQPPPTWMIGEVEPMKGTAGQVTVVALLQATULFCLVQASR <
          ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| <
  Target  MWVRLSLLLTLCLLHGGGAESEGGGPRCQPPSTWMIGEVEPMKGTAGQVTVVALLQATULFCLVQASR  
          atgccatccactcccgggggaggggcctccctataaggggcaagaggcgagggctcgatctttgcgta  
          tgtgtgtttctgttagggcagagggcggaccccgttgatactagccgatcttcttaccgttgttaccg  
          gggcgcgccgccgctgctagtgccgtctgcagaggcgggagggcaacaaagtcgaaccagtcgggcc   
                                                                    *           
  
  Query   ---Intron---> IDGLRQKLETQGLNDVVYMVINHQGEQAQRLHPLLAQRLSDKISLYKQGEQQPDVW
             759bp    > ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
  Target                IDGLRQKLEAQGLNDVVYMVINHQGEQAQRLHPLLAQRLSDKISLYKQGEQQPDVW
                        aggcccatggcgcagggtagaaccggcgcccccccgcactgaatctacggcccggt
                        tagtgaatacagtaattatttaaagaacagtacttcagtcaatctaaagaaacatg
                       atttgcgaggtgagtcgtcgccccgggacgacccagtgggatgcagcagtaaatttg
                                                                                
  
  Query   QTLNGKKDDFIIYDR <---Intron---> CGRLTDHISLPYSVIGHGHIESAIKEAYCNRKCGACSHE
          ||||||||||||||| <   110bp    > |||||||||||||||||||||||||||||||||||||||
  Target  QTLNGKKDDFIIYDR                CGRLTDHISLPYSVIGHGHIESAIKEAYCNRKCGACSHE
          cacagaaggtaatga                tgccagcatccttgagcgcagagaaggttacatggttcg
          actagaaaatttaag                gggtcaatctcacttgagatagctaacagagaggcgcaa
          gcgtagaccccctc                gcctttcttcttttttatcttgtgcaaccctcgtcccatg
                                                                                
  
  Query    <---Intron---> TAETPEECRATPNAQPDADTPAAVGDNTEPDHSRHHGHGHHGHGHHGHGHHGHG
           <    92bp    > ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
  Target                  TAETPEECRATPNAQPDADAPAAVGDNTEPDHSRHHGHGHHGHGHHGHGHHGHG
                          aggacggtagacagccggggcgggggaagcgcacccgcgccgcgccgcgccgcg
                          ccaccaaggcccacacacacccctgaacacaaggaagagaagagaagagaagag
                          ttgtagacaaaatagttatacataaccaatcctcttttttttttttttctcttc
                                                                                
  
  Query   HHGQHGHHHHRHHPDHHGHHHGNHNGDGFGSDLEQSQQGVRQDHAQHGFDSLQLQQAVDTEQLLQQAIAA
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
  Target  HHGQHGHHHHRHHPDHHGHHHGNHNGDGFGSDLEQSQQGVRQDHGQHGFDSLQLQQAVDTEQLLQQAIAA
          ccgccgccccacccgccgcccgacagggtgtgtgcaccggacgcgccgtgtcctccgggagcttccgagg
          aagaagaaaagaacaaagaaagaaagagtgcataagaagtgaaagaagtactataactacaattaactcc
          tttgttttctgccttttttcttcctttctctcggatgggtggtttgtctcaggagaagcaggaaggcaac
                                                                                
  
  Query   PVRP
          ||||
  Target  PVRP
          cgac
          ctgc
          ttgt