Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: 7e-64
Query protein: gi|928046123|ref|XP_013872017.1| PREDICTED: selenoprotein O [Austrofundulus limnaeus]
Positions on query: 1-691 Query length: 691

Target name: KQ557202.1:subseq_22990000,106000_
Positions on target: 50774-51327,51484-51687,51774-51951,52271-52401,53233-53510,53587-53755,55527-55712,55955-56111,56201-56422 Strand: +
Has a Redox Box!


  Query   MAYLGPRVWTSRLFIPGVSVFRLLGSGSMDDMGLTASRSPLERLDFDNVVLRKLPLDPSEEPGVRQVKGA
          |||||||/  ||||/| |/|||/| /  ||/|||   || |/||||||| |/|||||||/||||| ||||
  Target  MAYLGPRLGVSRLFLPRVTVFRVLCTVRMDEMGLAVGRSALDRLDFDNVALKKLPLDPSDEPGVRMVKGA
          agttgcccggtcctcccgagtagctagaaggagcgggctgtgccgtgaggcaacccgctggcggcagagg
          tcatgcgtgtcgtttcgtcttgttgctgtaatgtctggcctagtataatctaatctaccaacgtgttagc
          gttaacggaggcccgctgaccacccacggcggtgcgtcctgcaccttccctgatcgcgctgggcaggaag
                                                                                
  
  Query   CFSRVKPQPLSNPRFVAVSPEALTLLGLHADEVLKDPLGPEYLSGSRVMPGSEPAAHCYCGHQFGNFAGQ
          ||||| |/||||||||||| ||| ||||  /||/ |||||||||||/|||||||||||||||||| ||||
  Target  CFSRVNPEPLSNPRFVAVSGEALALLGLAGEEVMNDPLGPEYLSGSKVMPGSEPAAHCYCGHQFGQFAGQ
          tttcgacgccaacctgggtgggcgtcgcgggggaagccgcgtcagtagacgtgcggctttgcctgctggc
          gtcgtacactgacgttctcgactcttgtcgaattaactgcaatggcattcgcacccagaggaatgatcga
          tctatttgggtctgcgctgcacaggggtcaagtgcctccggcgcgtacgtacgcgtcccctcgccgtcgg
                                                                                
  
  Query   LGDGAACYLGEVKAPPSQDPELLRENPCGRWEIQVKGAGLTPFSR <---Intron---> QADGRKVLR
          ||||||||||||  || |/|||||||| ||||||||||||||/|| <   156bp    > /||||||||
  Target  LGDGAACYLGEVTVPPGQNPELLRENPSGRWEIQVKGAGLTPYSR                KADGRKVLR
          cgggggttcgggagccgcacgtccgacagctgacgagggcactta                agggcagcc
          tgagccgatgatctccgaacattgaacggggatatagcgtccacg                acaggattg
          ggcgcctctagggtagaataggcgatgcggggtggaagagcatc                gattcaacga
                                                                                
  
  Query   SSIREFLCSEAMFFLGVPTTRAGSVVTSDSRVIRDVYYSGXPQHERCSVVLRIAPTFLR <---Intron
          ||/|||||||||||||/|||||||||||||/||||/|||| | /|/||||||||||||| <    86bp 
  Target  SSVREFLCSEAMFFLGIPTTRAGSVVTSDSKVIRDIYYSGNPCYEKCSVVLRIAPTFLR           
          tagagtctaggattcgacaaaggtggatgaagaagattagacttgattggccagcatca           
          cgtgattggacttttgtcccgcgcttccagattgataaggacgaaagctttgtcccttg           
          ctaaactctgggccctccccaaccgcctccgtagcccccgtctcgacagcccctcccc            
                                                                                
  
  Query   ---> FGSFEIFKAADEFTGRQGPSYGRDEIRGQMLDYVIEVFYPEIQQNYPDRVERNVAFFRE <---I
             > |||||||| ||||||||||||||/||||||||||||/||||||/ /|||/||||||||| <   3
  Target       FGSFEIFKPADEFTGRQGPSYGREEIRGQMLDYVIEMFYPEIQRGHPDRLERNVAFFRE      
               tgttgatacgggtagccgcatgcggacgcatgtgagattcgaccgccgccgaaggttag      
               tgctattaccaatcggagcgaggaatggattaattattacataggacagtagatcttga      
              gctctgccagttgcggtgtctcagagcatgggttctagtctacggttacgggacgtctag      
                                                                                
  
  Query   ntron---> VMYRTARLVAQWQCVGFCHGVLNTDNMSVQGLTLDYGPYGFMDR <---Intron---> 
          19bp    > || |||||||||||||||||||||||||| |||||||||||||| <   831bp    > 
  Target            VMSRTARLVAQWQCVGFCHGVLNTDNMSVLGLTLDYGPYGFMDR                
                    gatcagccggctctggttcggcaagaaagtgcacgtgctgtaga                
                    ttcgccgttcagagtgtgagttacaatgttgtctaagcagttag                
                    ggctatacgtgggttactcatgccctgttgactgcctgtccgc                g
                                                                                
  
  Query   FDPDFICNASDSSGRYSYQAQPAICRWNLVKLAEALAPELPPDRAEAVMEEYLDLFNRFYLENMRKKLGL
          |||||||||||/||||||/||||||||||||||||||||||||||/|| /|||| |||||||||||||||
  Target  FDPDFICNASDNSGRYSYKAQPAICRWNLVKLAEALAPELPPDRAKAVTDEYLDHFNRFYLENMRKKLGL
          tgcgtatagtgatgctttagccgatatacgacgggcgcgtccgcgaggaggtcgctacttcgaaaaacgt
          tacattgaccaacggacaacacctgggattatcactccatccagcactcaaataatagtataatgaatgt
          ttatctctgacctgatgcgcggcccggcggggagtgtaggaataagtggtacgtccccccggcgggagtg
                                                                                
  
  Query   LTKEEPEDEILITELLQTMHNTG <---Intron---> ADFTNTFRSLSQISCPTEGEAEGHEGL-KKT
          | ||||||||||||||/|||/|| <    76bp    > ||||||||/|/|||||/||| |  | / || 
  Target  LRKEEPEDEILITELLRTMHDTG                ADFTNTFRNLAQISCPSEGETERDEEIVKKA
          caaggcgggacaagcccaacgag                ggtaaatcatgcattctgggagcgggagaag
          tgaaacaaatttcattgctaac                gcatcactgatcatcgccagacagaaattaac
          gaggacgcgcgctgggtagcca                ctctgccctcatgtctaagaaggacgactgac
                                                                                
  
  Query   TDLLLEQCASLEELKAANKPTMDLR <---Intron---> ELSMLLSMAQSNPTLFQMVSDRVTIARQL
          //|||||||||||||/|| |||| | <   1771bp   > ||||||||||||| ||/|/||| ||||||
  Target  SELLLEQCASLEELKSANTPTMDPR                ELSMLLSMAQSNPALFEMISDRATIARQL
          tgcccgctgttggcatgaacaagcc                gttacctagcaacgctgaatgagaagact
          catttaagcctaataccaccctacg                atctttctcagaccttattcagcctcgat
          aaccgggtttaggagaccacagta                tagaggccgtgccctgtggcacggccgagg
                                                                                
  
  Query   DKLGKLKDLMETSEEELRTKQAEEWSSWITHYR <---Intron---> KRLARELEGQSDVQSVQEERV
          |// ||| |/|||//||| /||/|| |||  || <   242bp    > ||||||||||||/| ||||| 
  Target  DRMSKLKVLLETSQDELRARQAQEWISWIALYR                KRLARELEGQSDIQVVQEERA
          gaaaacagccgaacggcagacgcgtattagcta                accgcgcggcagacggcggag
          agtgatatttacgaaatgcgacaagtcgtctag                agtcgatagagatattaaagc
          cagcaggcggggtgcggacggtgggccgcccc                gatgccgggtgcctgcgggggg
                                                                                
  
  Query   RVMNSSNPRVVLRNYIAQNAIEAAENGDFSE <---Intron---> VQRVLEVLQKPFSSQPGLELPVW
          |||/ /||||||||||||||||||||||||| <    89bp    > |||||/||/|||||||||||| |
  Target  RVMDGTNPRVVLRNYIAQNAIEAAENGDFSE                VQRVLKVLEKPFSSQPGLELPTW
          agaggaaccggcaatagcagaggggaggttg                gccgcagcgactttccgcgccat
          gttagcacgtttgaatcaactaccaagatca                tagttattaactccacgtatccg
          aggcccctcagcacctcgtaagttgtgcctg                cagccgtggagtttgagggtttg
                                                                                
  
  Query   VGEPGTTAQAERDEGEEQQHGASASAA-RTPLPYDSKPPAWAQQICVTUSS
          ||    | | ||||||| | | |/|/   /|/||||||||||/||||||||
  Target  VGSHRRTEQGERDEGEEPQQGTSSSSTDMSPVPYDSKPPAWARQICVTUSS
          ggtcaaagcggagggggcccgattttagaacgctgaaccgtgccatgattt
          tgcaggcaagagaagaacaagccccccatgctcaagacccgcgatgtcgcc
          gtacggtaggggtaaggaggaccaaaacgctggtccgcaagacaccccatt
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