Selenoprotein id: 1 Category: known selenoprotein help Protein prediction Predicted by: exonerate Blastx evalue: 4e-47 Query protein: gi|941785468|ref|XP_005801360.2| PREDICTED: selenoprotein N [Xiphophorus maculatus] Positions on query: 1-556 Query length: 556 Target name: KQ557211.1:subseq_3076858,107900_ Positions on target: 57721-57906,56234-56351,55516-55646,55234-55446,55032-55156,53635-53772,52969-53050,51785-51973,51603-51708,50776-50888,50590-50691,49994-50158 Strand: - Query MAADVDKSTPERERSTGGSGQRSPGCGAWFRGWMWTLLAVCAVPLAGFGMKYYQNSQLLRRH <---Int |||||||||||||||||||||||||||||||||||||||||||||||||/|||||||||||| < 136 Target MAADVDKSTPERERSTGGSGQRSPGCGAWFRGWMWTLLAVCAVPLAGFGIKYYQNSQLLRRH agggggaaacgagcaaggagcaacgtggttcgtataccggtggccggtgaattcatcccacc tccataagccagaggcggggaggcgggcgtgggtgcttctgctctcgtgtaaaaacattgga gcacgtaccggagcccgctgggtgatacgccagggcgggccgttgtttgaaccgccgacgtt Query ron---> EEAVQTLGVEGLFLFSSLDTDHDLCLSPEEFRPIAEKLTG <---Intron---> ITAPVD 9bp > |||||||||||||||||||||||||||||||||||||||| < 587bp > |||||| Target EEAVQTLGVEGLFLFSSLDTDHDLCLSPEEFRPIAEKLTG ITAPVD ggggcacggggctctttcgagcgctcacggtacaggacag aagcgg aactactgtagttttcctacaaatgtgcaatgctcaatc gtcccta aggtgtgtcacgcccctgcgctcccgttggcaccaggca gcagagt Query LEEDVIDDPNGETLVLEASMKPLLLDSMTKSRDRFLG <---Intron---> LSHSSLSGLRSWTHPAV ||||||||||||||||||||||||||||||||||||| < 69bp > ||||||||||||||||| Target LEEDVIDDPNGETLVLEASMKPLLLDSMTKSRDRFLG LSHSSLSGLRSWTHPAV cggggaggcaggacgcggaaaccccgtaaaacgctcg ctcatcagccttaccgg taaattaacagactttacgtactttactcaggagttg tcagctggtgcgcacct gagtgcccacggtgtggccggtgggccgaacccctcg ttccggtccccggccct Query PSSSFPAGHFRVFLPPKGKTEPGDAWWVIPSELNIFTGYLPNNRYHPPTPKGKE <---Intron---> |||||||||||||||||||||||||||||||||||||||||||||||||||||| < 77bp > Target PSSSFPAGHFRVFLPPKGKTEPGDAWWVIPSELNIFTGYLPNNRYHPPTPKGKE cttttcggctcgtcccagaagcgggttgacagcaatagtccaactcccacagag cccctccgatgtttccagacacgacggttcgatattcgatcaagaaccccagaa cccgctcaccagtgcagcagggacaggctccacccctccgcccgcctccagcag Query VLIHSLLSMFHPRPFIKSRFAPQGTVACIRASSDFYYDIVFR <---Intron---> IHAEFQLNDVPN |||||||||||||||||||||||||||||||||||||||||| < 1259bp > |||||||||||| Target VLIHSLLSMFHPRPFIKSRFAPQGTVACIRASSDFYYDIVFR IHAEFQLNDVPN gcactccaatcccctaatatgccgaggtacgaagtttgagta acggtccaggca tttacttgttacgcttacgtccagctcgtgcggataaatttg tacatataatca tgcccggcgccggtccgggtaggacccccacccctcttccc gtcagtgctttac Query FPFWFTPGQFTGNIVISKDASHVRHFRLYVPSNR <---Intron---> SLNVDMEWLYGASESSNMEV |||||||||||||||||||||||||||||||||| < 584bp > |||||||||||||||||||| Target FPFWFTPGQFTGNIVISKDASHVRHFRLYVPSNR SLNVDMEWLYGASESSNMEV tctttacgctagaagataggtcgcctcctgcaaa tcaggagtctggagaaaagg tctgtccgatcgatttcaaccatgatgtatcgag ctatatagtagcgaggatat tccgccgtgccacccctgtcccctcccttcctc gtgcgcggggtcccgcccggg Query DIGYLPQ <---Intron---> LELRSAGPSTPSVIVDEDGNVIDSRDGRGEPIRFVFEEIRWTSAINQ ||||||| < 995bp > ||||||||||||||||||||||||||||||||||||||||||||||/ Target DIGYLPQ LELRSAGPSTPSVIVDEDGNVIDSRDGRGEPIRFVFEEIRWTSAINE gagtccc tgtctggctactgagggggagagacggcggcactgtggactatgaag atgatca tatgccgccccctttaaagattaggagggactgtttaatggccctaa cctcgag gaggtaccctctctgcgtacccccgcaccagcgcctgatcgcagctg Query EEASHRLEVTFYPFKK <---Intron---> VPYLPFAEAFERAESEKKLVHSILLWGALDDQSCUG < |||||||||||||||| < 76bp > ||||||/||||||||||||||||||||||||||||| < Target EEASHRLEVTFYPFKK VPYLPFSEAFERAESEKKLVHSILLWGALDDQSCUG gggtcccggattctaa gcttcttggtgcggtgaacgctacctggtggctttg aaccagtatctactaa tcatctcactagcacaaattactttggctaaacgg gatcccggctccgtgg tccgttagttgacggggggctgtgcgatattgcca * Query ---Intron---> SGRTLRETVLESSPVLALLNQSFISSWSLVKELENMQ <---Intron---> ADK 714bp > ||||||||||||||||||||||||||||||||||||| < 84bp > ||| Target SGRTLRETVLESSPVLALLNQSFISSWSLVKELENMQ ADK tgcaccgagcgatcgcgccacataaattcgagcgaac gga gcggctgacttagccttcttaagttgggcttaataata caa tggatcgggcgatgccctgccgcccccgtgcagggcgg tcg Query QNPALSEKAQLHLEKYSFPVEMLVALPNGTI <---Intron---> VHHINANYFLDQTAMKPEDEGAT ||||||||||||||||||||||||||||||| < 431bp > ||||||||||||||||||||||| Target QNPALSEKAQLHLEKYSFPVEMLVALPNGTI VHHINANYFLDQTAMKPEDEGAT cacgcagagctccgatatcggatggtcagaa gccaagattcgcagaacggggga aacctgaacatataaagtctatttctcagct taatacaattaacctacaaagcc gctggcagcgatgggcccagggggggctact ccccctcccccagagaagcagat Query FSFSGGFEDPSTSTYISFLKEGLEKAKDYITQ |||||||||||||||||||||||||||||||| Target FSFSGGFEDPSTSTYISFLKEGLEKAKDYITQ tattggtggctatataatcaggcgagagtaac tgtcggtaacccccatgttaagtaacaaatca ccttggtgcccacgccccgggaggaagccacg