Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: 2e-43
Query protein: gi|941758519|ref|XP_014324207.1| PREDICTED: selenoprotein M [Xiphophorus maculatus]
Positions on query: 1-158 Query length: 158

Target name: KQ557204.1:subseq_17332909,104890_
Positions on target: 49166-49261,50006-50041,50215-50249,50329-50407,54750-54977 Strand: +
Has a Redox Box!


  Query   MWLIVLASFLHCASGYDVDLQKLDGLAKARVE <---Intron---> TCGGUQLNRLRE <---Intro
          |||||||||||||||||||||||||||||||| <   744bp    > |||||||||||| <   173bp
  Target  MWLIVLASFLHCASGYDVDLQKLDGLAKARVE                TCGGUQLNRLRE          
          atcagcgttcctgtgtgggccacggcgagagg                atggtccaacag          
          tgttttccttagccgaatataatagtcacgta                cggggatagtga          
          gggcggccctctcgcctgtagggcggcacggg                attaaagtacag          
                                                              *                 
  
  Query   n---> VKAFVMQDIPLY <---Intron---> HNLVMKHIPGADPELVLLNHYYEELD <---Intro
              > |||||||||||| <    79bp    > |||||||||||||||||||||||||| <   4342b
  Target        VKAFVMQDIPLY                HNLVMKHIPGADPELVLLNHYYEELD          
                gagtgacgacct                cacgaacacgggcgcgccacttggcg          
                tactttaatcta                aatttaatcgcacattttaaaaaata          
                cactgggtttt                ctcggggcttgtttgtccgccctaaat          
                                                                                
  
  Query   n---> RIALSDMTRSEINELLEKLGFYKKAQPEDEVPEELRFAPAKDSPFKDDRPLKSSMSTVDTENAS
          p   > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Target        RIALSDMTRSEINELLEKLGFYKKAQPEDEVPEELRFAPAKDSPFKDDRPLKSSMSTVDTENAS
                cagctgaactgaagccgacgttaagccggggcggtctgcgagactaggcccattataggagagt
                gtctcatcgcataattaatgtaaacacaaatcaatgtcccaagctaaagctacctcctacaacc
                gatgtcgcctgtcggggagtccgataaacgggggatctccaccgcacccgcaatgctacagccc
                                                                                
  
  Query   SESNPEVKHTDL
          ||||||||||||
  Target  SESNPEVKHTDL
          tgtacggacagc
          cacacataacat
          agttagcgccca