Selenoprotein id: 1         Category: known selenoprotein
Protein prediction
Predicted by: exonerate Blastx evalue: 3e-53
Query protein: gi|961910165|ref|XP_014858421.1| PREDICTED: crystallin J1B-like [Poecilia mexicana]
Positions on query: 1-344 Query length: 344

Target name: KQ557214.1:subseq_5831510,104800_
Positions on target: 48673-48739,49998-50177,50454-50552,52167-52259,52358-52514,52614-52729,53239-53316,53627-53766,54758-54859 Strand: +


  Query   MASSVADRAIGAIIGAAVADAAA <---Intron---> QPMHWIYNPDRLNEVLSDLEPCPEFRPLSAN
          |||| |||||||||||||||||| <   1258bp   > ||||||||||||||||||||| |||||||||
  Target  MASSAADRAIGAIIGAAVADAAA                QPMHWIYNPDRLNEVLSDLEPRPEFRPLSAN
          agtagggagaggaaggggggggg                ccactatacgccaggctgcgcccgtccctga
          tccgccagctgcttgcctcacc                cactagtaacagtaattcatacgcatgctcca
          gcgcgtcactccttgatgataa                tgggcgcccgcggtaccccggctcgtgtgaat
                                                                                
  
  Query   PFYRRTTGEQTCYGDQAYVLLESLSQCGD <---Intron---> VDVKDLTKRFYEFFGPGTVYDLPVN
          ||||||||||||||||||||||||||||| <   276bp    > |||||||/||||||||||/||||||
  Target  PFYRRTTGEQTCYGDQAYVLLESLSQCGD                VDVKDLTRRFYEFFGPGTLYDLPVN
          cttcaaaggcattggcgtgccgtcactgg                gggagcaacttgttgcgattgccga
          ctaggccgaacgagaacatttactgagg                atataatcggtaattgcgctaatcta
          tctcgagcggcccacggccgggggtgca                tctgacgtgcccgctggaggctgccc
                                                                                
  
  Query   DPYRKKGG <---Intron---> PKAILPIDGPWRNASLKAFLRNVDAGKEEPG <---Intron--->
          |||||||| <   1614bp   > ||||||||||||||||||||||||||||||| <    98bp    >
  Target  DPYRKKGG                PKAILPIDGPWRNASLKAFLRNVDAGKEEPG               
          gctaaagg                cagaccaggctaagacagttaaggggaggcg               
          acagaag                gcacttctagcggacgtacttgatacgaaac                
          ttcgaaa                tcacttctctgggcgcggtcaattccaaaaa                
                                                                                
  
  Query    CDVDCQIDGITKLAPVVAMFAGRPEMLEKVESAVRVTQNNDMCVAVTLAAAR <---Intron---> F
           |||||||||/||||||||||||||||||||||| |||||||||||||||||| <    99bp    > |
  Target   CDVDCQIDGVTKLAPVVAMFAGRPEMLEKVESATRVTQNNDMCVAVTLAAAR                F
           tgggtcagggaacgcgggatggccgacgaggagacgacaagatgggacggga                t
          ggatagatagtcatccttcttcggcattaatagccgtcaaaatgtctctcccg                t
          cccgctgtctccactgcccgccgacggggaggccgcccacccgcgagtgttg                at
                                                                                
  
  Query   LEHFVLKGPDPNALDVVVAQLSDPNRKNPQDLDRAVIA <---Intron---> HIGQVKENLAKASHQL
          || ||||||||/||| ||||||/||||||||||||||| <   509bp    > ||||||||||||||||
  Target  LELFVLKGPDPDALDAVVAQLSNPNRKNPQDLDRAVIA                HIGQVKENLAKASHQL
          cgctgcagcgcggtgggggccaacaaaaccgcgaggag                cagcgagatgagtccc
          tattttagcacactacttcatgacagaacaatagctt                catgataaatcaccaat
          gatctgacgtcctgtatgtggccccggctgtgcgtct                gtccggggcacagctgc
                                                                                
  
  Query   IPAVFTNTUA <---Intron---> LPGAFQAALHGVLTMKQLEEAVRDTMRRGGCTASRASFIGACFG
          |||||||||| <   310bp    > |||||||||||||||||||||||||/||||||||||||||||||
  Target  IPAVFTNTUA                LPGAFQAALHGVLTMKQLEEAVRDTIRRGGCTASRASFIGACFG
          acggtaaatg                tcggtcggccggcaaaccggggagaaccggtagacgttaggttg
          tccttcacg                ctcgctacctagttctaataactgactgggggccggccttgcgtg
          actgctcaa                tgccgcggggcgcgcgaggggtggccacagaccccgccccacccg
                  *                                                             
  
  Query   AQ <---Intron---> TGLRGIPESWRKRTLRYPLLLDLAENVVGRRQQL
          || <   991bp    > |||||||||||||||||||||/|||||||/||||
  Target  AQ                TGLRGIPESWRKRTLRYPLLLELAENVVGKRQQL
          gc                agccgacgttaaaacatccctgcggagggaccct
          ca                cgtggtcacggagctgactttatcaattgagaat
          gg                ctccacggagggggcactgggggtatgccagggg