Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: 2e-21
Query protein: gi|1039360004|ref|XP_008418530.2| PREDICTED: selenoprotein H [Poecilia reticulata]
Positions on query: 5-126 Query length: 126

Target name: KQ557216.1:subseq_15525111,100600_
Positions on target: 48575-48693,49990-50132,50473-50576 Strand: +
Has a Redox Box!


  Query   AGRRGTKRKAEEVQTFTEEKKEKGEEESGQNGLKVVIEHC <---Intron---> KSURVYGRNAEEVK
          /||||||||| |||||||||||||||||||||/|| |||| <   1296bp   > ||||||||||||||
  Target  SGRRGTKRKAGEVQTFTEEKKEKGEEESGQNGVKVAIEHC                KSURVYGRNAEEVK
          tgcagaacaggggcataggaagaggggagcaggaggagct                aatcgtgcagggga
          cggggcagacgatactcaaaaaagaaaggaagtatctaag                agggtaggacaata
          accagggcaggatgatggggggaagggccatcgagctac                cacaagtgtccggga
                                                                    *           
  
  Query   SALLAARPGLTVVLNPEKPRRNSFEITLLDGGKE <---Intron---> TSLWTGIKKGPPRKLKFPQP
          |||||||||||||||||||||||||||||||||| <   340bp    > ||||||||||||||||||||
  Target  SALLAARPGLTVVLNPEKPRRNSFEITLLDGGKE                TSLWTGIKKGPPRKLKFPQP
          tgccggccgcaggcacgaccaaatgaaccgggag                atctagaaagcccacatccc
          ccttccgcgtctttacaacggagtatcttagga                acctgcgtaagccgatatcac
          tctgtcccggggccccggccgcccgccggcaca                aattggaaggtattaggttga
                                                                                
  
  Query   DSVVAALHEALKTE
          ||||||| ||||||
  Target  DSVVAALQEALKTE
          gaggggccggcaag
          agttcctaactaca
          ctttttggattgta