Protein prediction
Predicted by: exonerate Blastx evalue: 3e-19
Query protein: gi|1039407117|ref|XP_008416122.2| PREDICTED: selenoprotein M-like [Poecilia reticulata]
Positions on query: 1-135 Query length: 135

Target name: KQ557204.1:subseq_27520000,100876_
Positions on target: 52746-52853,53178-53254,53448-53526,53908-54048 Strand: +


  Query   MWALLVLTLGLAAGALGSSNKTAAEEQLVIARAKLM <---Intron---> APSVVGUAIKKMPELHHF
          |||||||| ||||||| |||||||||/| ||||||| <   324bp    > ||||||||||||||||||
  Target  MWALLVLTFGLAAGALESSNKTAAEERLAIARAKLM                APSVVGUAIKKMPELHHF
          atgttgcatgcggggtgaaaaaggggccgagagaca                gcagggtgaaaacgccct
          tgcttttctgtccgctaggaacccaagtctcgcatt                ccgttggctaatcataat
          ggcgggcttatttaaaacccggataagttacatagg                actgtaacagagtgctcc
                                                                    *           
  
  Query   LMERSALY <---Intron---> HNLEYDSSEEKKPRLIFYNEKNEVVK <---Intron---> TVPV
          |||||||| <   193bp    > |||||||||||||||||||||/|||| <   381bp    > ||||
  Target  LMERSALY                HNLEYDSSEEKKPRLIFYNEKDEVVK                TVPV
          cagctgtt                catgtgttggaacccattagagggga                agcg
          ttagccta                aataaaccaaaacgtttaaaaaatta                ctct
          cggagta                ctcagtcaaggggctgatctagtatgg                tctg
                                                                                
  
  Query   KNMKADEISSLLESLGFYKRSQKGEKVPEEFQNFPLHAPRDEL
          |||||||||||||||||||||||||||||||||||||||||||
  Target  KNMKADEISSLLESLGFYKRSQKGEKVPEEFQNFPLHAPRDEL
          aaaagggaaactgtcgttaatcaggagcggtcatcccgcaggc
          aatacaatggttactgtaagcaagaatcaataatctaccgaat
          gcggatgcccgagtgtctggcgagaagaggcgccagcaagcgg