TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000662_2.0 # Protein # Eukaryotic elongation factor (eEFsec) # Zebrafish Length=576 Score E Sequences producing significant alignments: (Bits) Value KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 303 8e-87 KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 43.1 0.011 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 42.4 0.019 KQ557220.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 40.4 0.081 KQ557205.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 38.5 0.30 KQ557215.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 36.6 1.3 KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 35.0 3.5 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 303 bits (775), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 145/216 (67%), Positives = 178/216 (82%), Gaps = 8/216 (4%) Frame = +2 Query 254 KVTRKVKSVQMFRKPVASAMQGDRVGVCVTQFDPKLLERGVVCTPGSLQTLYAAIISVQK 313 +VT+K+KSVQMFRKPV+ AMQGDRVGVCVTQFDPKLLERG+VCTPGSL+TLYAAIIS +K Sbjct 11484017 QVTKKIKSVQMFRKPVSGAMQGDRVGVCVTQFDPKLLERGLVCTPGSLRTLYAAIISTRK 11484196 Query 314 IEYYRGALNSRAKFHITVGHETVMARISFFNRVLPANENGDSKPTSQEQSA--NSFSFDW 371 I Y++G+L +RAKFHITVGHETVMA+++FF LP D+KPT E S+ F+F+ Sbjct 11484197 IGYFKGSLATRAKFHITVGHETVMAKVTFFG--LPP---ADTKPTPSEPSSLETPFTFER 11484361 Query 372 EFHHLDEHLTSQAEGGKG-EPQQWALLEFERPVTCPPLCLVIGSRLDSDIHGNTCRLAFH 430 E+ + DE+++ Q E G +P+QWALLEFERPVTCP LCLVIGS+LD+DIH N CRLAF Sbjct 11484362 EYSYQDEYVSRQKEAASGPDPEQWALLEFERPVTCPALCLVIGSKLDTDIHANACRLAFQ 11484541 Query 431 GKLLEGFEDKNYTETALPRLKISKDKQKEGAVERVT 466 G+LL GFEDK+Y ET+LP+L+I K K KEG VERV+ Sbjct 11484542 GRLLHGFEDKSYAETSLPQLRIFKTKHKEGQVERVS 11484649 Score = 122 bits (305), Expect(2) = 2e-39, Method: Compositional matrix adjust. Identities = 59/70 (84%), Positives = 66/70 (94%), Gaps = 0/70 (0%) Frame = +2 Query 98 GAQIIDLMMLVVDVVKGMQTQTAECLLIGQLTCSRMVVILNKTDLLPSDKRQVAIDKMTK 157 GAQIIDLMMLVVDVVKG+QTQTAECLLIG+LTC RMVV+LNK DLLP +KRQ AI+KMTK Sbjct 11481131 GAQIIDLMMLVVDVVKGVQTQTAECLLIGELTCPRMVVVLNKIDLLPPNKRQSAIEKMTK 11481310 Query 158 RMHKTLENTR 167 R+HKTLE+TR Sbjct 11481311 RLHKTLESTR 11481340 Score = 64.3 bits (155), Expect(2) = 2e-39, Method: Compositional matrix adjust. Identities = 26/34 (76%), Positives = 33/34 (97%), Gaps = 0/34 (0%) Frame = +3 Query 167 RFKDCPIIAVAAKPGGPEAPDTDEPQGITELIDL 200 RFK+CP+IAVAAKPGGPEAP+T+EPQG+ ELI++ Sbjct 11481462 RFKECPVIAVAAKPGGPEAPETEEPQGVPELIEV 11481563 Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/102 (84%), Positives = 93/102 (91%), Gaps = 4/102 (4%) Frame = +2 Query 1 MTDFP----KTLNFNVGVLGHVDSGKtslaralsstastaaFDKNPQSKERGITLDLGFS 56 MT+ P KTLNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQS+ERGITLDLGFS Sbjct 11479958 MTESPDSRAKTLNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQSRERGITLDLGFS 11480137 Query 57 AFTVPLPEHLRESCGEKQYDSLQFTLVDCPGHASLIRTIIGG 98 +FTV P+HLR+S G++ YDSLQFTLVDCPGHASLIRTIIGG Sbjct 11480138 SFTVDCPDHLRDSGGQQPYDSLQFTLVDCPGHASLIRTIIGG 11480263 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/61 (77%), Positives = 51/61 (84%), Gaps = 0/61 (0%) Frame = +3 Query 195 TELIDLLKAQSFLPHRDPSGSLLMAVDHCFSIRGQGTVITGTILQGSLSVNDNVEIPALK 254 T L LLK Q++LP RD G LLMAVDHCFSIRGQGTV+TGTILQGSL+VND VEIP LK Sbjct 11482962 TFLSQLLKQQTYLPKRDAKGDLLMAVDHCFSIRGQGTVMTGTILQGSLAVNDTVEIPVLK 11483141 Query 255 V 255 V Sbjct 11483142 V 11483144 Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 45/52 (87%), Positives = 50/52 (96%), Gaps = 0/52 (0%) Frame = +3 Query 464 RVTDDYTVIGRNLFKKETNLQLFVGLKVTLSTGEAGSIEGGFGQSGKIKIRI 515 +VTDDY+VIGR+LFKKETNLQLFVGLKVTL+TGE+G IEGGFGQSGK KIRI Sbjct 11488884 QVTDDYSVIGRSLFKKETNLQLFVGLKVTLTTGESGVIEGGFGQSGKFKIRI 11489039 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/64 (55%), Positives = 42/64 (66%), Gaps = 2/64 (3%) Frame = +2 Query 513 IRIPEGLKEETKQLLsssskkkgkggskNESPKLEEAKPDAQPVTIHLNFKRYIYDPHKK 572 + EGL+ ETKQLLSS K K EE K ++QPV IHL+FKRY++DPHKK Sbjct 11491463 VYFSEGLRPETKQLLSSKKKGKSGSKGGLACE--EEPKTESQPVGIHLHFKRYVFDPHKK 11491636 Query 573 MVQS 576 MVQS Sbjct 11491637 MVQS 11491648 > KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold24, whole genome shotgun sequence Length=55650406 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/71 (31%), Positives = 36/71 (51%), Gaps = 15/71 (21%) Frame = -2 Query 38 FDKNPQSKERGITLDLGFSAFTVPLPEHLRESCGEKQYDSLQFTLVDCPGHASLIRTIIG 97 D N + +++G T+++G + F + D FT++D PGH S + +IG Sbjct 55151991 LDTNQEERDKGKTVEVGRAYF---------------ETDKKHFTILDAPGHKSFVPNMIG 55151857 Query 98 GAQIIDLMMLV 108 GA DL +LV Sbjct 55151856 GASQADLAVLV 55151824 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (54%), Gaps = 15/71 (21%) Frame = +3 Query 38 FDKNPQSKERGITLDLGFSAFTVPLPEHLRESCGEKQYDSLQFTLVDCPGHASLIRTIIG 97 D N + +++G T+++G + F EK++ FT++D PGH S + +IG Sbjct 24809505 LDTNQEERDKGKTVEVGRAYFET-----------EKKH----FTILDAPGHKSFVPNMIG 24809639 Query 98 GAQIIDLMMLV 108 GA DL +LV Sbjct 24809640 GASQADLAVLV 24809672 > KQ557220.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold19, whole genome shotgun sequence Length=31600912 Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust. Identities = 28/76 (37%), Positives = 38/76 (50%), Gaps = 2/76 (3%) Frame = -3 Query 223 CFS--IRGQGTVITGTILQGSLSVNDNVEIPALKVTRKVKSVQMFRKPVASAMQGDRVGV 280 CFS + G GTV G + G L V + VT +VKSV+M + ++ A+ GD VG Sbjct 15689810 CFSASLSGIGTVPVGRVETGILKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGF 15689631 Query 281 CVTQFDPKLLERGVVC 296 V K + RG V Sbjct 15689630 NVKNVSVKDIRRGNVA 15689583 Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust. Identities = 16/45 (36%), Positives = 24/45 (53%), Gaps = 0/45 (0%) Frame = -1 Query 79 QFTLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGMQTQTAECL 123 + T +D PGHA+ GA D+++LVV G+ QT E + Sbjct 1638856 RITFLDTPGHAAFSSMRARGANATDIVVLVVAADDGVMNQTVESV 1638722 > KQ557205.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold4, whole genome shotgun sequence Length=26266306 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 34/73 (47%), Gaps = 0/73 (0%) Frame = +2 Query 223 CFSIRGQGTVITGTILQGSLSVNDNVEIPALKVTRKVKSVQMFRKPVASAMQGDRVGVCV 282 C + G GTV G + G L V +T +VKSV+M + + A+ GD VG V Sbjct 1802156 CLCLSGIGTVPVGRVETGILKPGMVVTFAPPNLTTEVKSVEMHHESLPEALPGDNVGFNV 1802335 Query 283 TQFDPKLLERGVV 295 K + RG V Sbjct 1802336 KNVSVKEIRRGNV 1802374 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 0/73 (0%) Frame = +3 Query 224 FSIRGQGTVITGTILQGSLSVNDNVEIPALKVTRKVKSVQMFRKPVASAMQGDRVGVCVT 283 F G GTV G + G L V +T +VKSV+M + + A+ GD VG V Sbjct 1795995 FFTPGIGTVPVGRVETGVLKPGMVVTFAPPNLTTEVKSVEMHHESLTEAVPGDNVGFNVK 1796174 Query 284 QFDPKLLERGVVC 296 K + RG V Sbjct 1796175 NVSVKEIRRGYVA 1796213 > KQ557215.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold14, whole genome shotgun sequence Length=28402361 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Frame = +3 Query 206 FLPHRDPSGSLLMAVDHCFSI--RGQGTVITGTILQGSLSVNDNVEIPALKVTRKVKSVQ 263 FL + ++ +C + G GTV G + G L V + VT +VKSV+ Sbjct 22232241 FLKSKTEPFNVFYQCSYCVTSFSSGIGTVPVGRVETGILKPGMVVTFAPVNVTTEVKSVE 22232420 Query 264 MFRKPVASAMQGDRVGVCVTQFDPKLLERGVVC 296 M + + A+ GD VG V K + RG V Sbjct 22232421 MHHEALTEALPGDNVGFNVKNVSVKDIRRGNVA 22232519 > KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold13, whole genome shotgun sequence Length=22457735 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 16/54 (30%) Frame = +1 Query 81 TLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGMQTQTAECLLIGQLTCSRMV 134 + VDCPGH L+ T++ GA ++D A LLIG+ C R+V Sbjct 20922256 SFVDCPGHDILMATMLNGAAVMD----------------AALLLIGESGCWRLV 20922369 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 23/70 (33%), Positives = 34/70 (49%), Gaps = 0/70 (0%) Frame = +3 Query 227 RGQGTVITGTILQGSLSVNDNVEIPALKVTRKVKSVQMFRKPVASAMQGDRVGVCVTQFD 286 G GTV G I G L + K+T +VKS++M + + +A+ G VG + Sbjct 15295182 EGVGTVPVGKIETGVLKPGMTLMFSPAKLTAEVKSIEMHHQGLDTALPGHNVGFNIKSVS 15295361 Query 287 PKLLERGVVC 296 K L+RG V Sbjct 15295362 VKNLQRGDVA 15295391 Lambda K H a alpha 0.318 0.136 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 106021900346 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40