TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000661_2.0 # Protein # Thioredoxin reductase 3 (TXNRD3) # Zebrafish Length=611 Score E Sequences producing significant alignments: (Bits) Value KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 153 3e-37 KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 75.1 2e-12 KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 58.9 2e-07 KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 48.5 3e-04 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 48.5 3e-04 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 73/90 (81%), Positives = 82/90 (91%), Gaps = 1/90 (1%) Frame = -2 Query 284 TSDDLFSLPYCPGKTLVVGASYVALECGGFLAGLGLDVTIMVRSILLRGFDQDMADRAGE 343 TSDDLFSL YCPGKTLV+GASYVALECGGFLAGLGLDVT+MVRSILLRGFDQ+MA+RAG Sbjct 2583705 TSDDLFSLSYCPGKTLVIGASYVALECGGFLAGLGLDVTVMVRSILLRGFDQEMANRAGA 2583526 Query 344 YMETHGVKFLRKFVPTKVGCIFPQIEQLEA 373 +METHGVKF+RKFVPTKV C++ + L A Sbjct 2583525 HMETHGVKFIRKFVPTKV-CVWAHVCVLLA 2583439 Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 68/105 (65%), Positives = 74/105 (70%), Gaps = 26/105 (25%) Frame = -3 Query 512 EVYHSLFWPLEFTVPGRDNNKCYAKIICNKLDNLR------------------------- 546 +VYHSLFWPLEFTVP RDNN+CYAKIICNKLD++R Sbjct 2579717 QVYHSLFWPLEFTVPSRDNNQCYAKIICNKLDSVRFQ*IYPPLSTVLSSQFIVFIVAFQD 2579538 Query 547 -VIGFHYLGPNAGEVTQGFGAAMKCGITKDQLDNTIGIHPTCAEI 590 VIGFHYLGPNAGEVTQGFGAAMKCG TK+ D TIGIHPTCAE+ Sbjct 2579537 RVIGFHYLGPNAGEVTQGFGAAMKCGATKEHFDATIGIHPTCAEV 2579403 Score = 103 bits (256), Expect(2) = 2e-33, Method: Compositional matrix adjust. Identities = 47/54 (87%), Positives = 51/54 (94%), Gaps = 0/54 (0%) Frame = -3 Query 424 KNGKVPVNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGKLLARRLYAGATMKC 477 +NGK+PVNDEEQTNVPHIYAIGDILE KWELTPVAIQAGKLLARRLY G+T+K Sbjct 2581268 RNGKIPVNDEEQTNVPHIYAIGDILEEKWELTPVAIQAGKLLARRLYGGSTVKV 2581107 Score = 63.5 bits (153), Expect(2) = 2e-33, Method: Compositional matrix adjust. Identities = 25/41 (61%), Positives = 36/41 (88%), Gaps = 0/41 (0%) Frame = -1 Query 476 KCDYVNVPTTVFTPMEYGSCGHPEEKAIQMYGQENLEVYHS 516 +CDY++VPTTVFTP+EYG+CG EE+A ++YG +N+EV +S Sbjct 2581030 QCDYIHVPTTVFTPLEYGACGLSEERATELYGPDNIEVNNS 2580908 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/37 (70%), Positives = 31/37 (84%), Gaps = 0/37 (0%) Frame = -2 Query 367 QIEQLEAGTPGRIKVTAKSTESEEVFEGEYNTVLIAV 403 QIEQLE G+PGR+KVTAKSTE++E E EYNTV +V Sbjct 2583282 QIEQLEEGSPGRLKVTAKSTETDETIEDEYNTVCRSV 2583172 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 0/55 (0%) Frame = -1 Query 370 QLEAGTPGRIKVTAKSTESEEVFEGEYNTVLIAVGRDACTGKIGLDKAGVKINEK 424 L + TP +I + T VLIAVGR+ACT KIGLDKAGVK+N K Sbjct 2582911 HLNSATPMQINEQPRRTSCN*PGPLSVPQVLIAVGRNACTDKIGLDKAGVKVNPK 2582747 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/23 (74%), Positives = 21/23 (91%), Gaps = 0/23 (0%) Frame = -1 Query 589 EIFTTMEVTKSSGGDITQSGCUG 611 ++FTT+EV+K SGGDITQSGC G Sbjct 2578189 QVFTTLEVSKRSGGDITQSGC*G 2578121 > KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Length=30170098 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 85/225 (38%), Gaps = 88/225 (39%) Frame = -3 Query 457 VAIQAGKLLARRLYAGAT-MKCDYVNVPTTVFTPMEYGSCGHPE---------------- 499 VAI AG+ LA RL+ G K DY ++PT VF+ G+ G E Sbjct 10974647 VAIAAGRKLAHRLFEGKKDSKLDYSSIPTVVFSHPPIGTVGPTEGDYSCILNDFTFSILY 10974468 Query 500 ------------------------------EKAIQMYGQENLEVYHSLFWPLEFTVPGRD 529 E+A++ +G+EN+++Y + F P+ + R Sbjct 10974467 YLIFW*ISQHS*LH*ANQHDKCVLVHILLSEEAVKSHGKENVKIYKTSFTPMYHAITSR- 10974291 Query 530 NNKCYAKIIC----------------------------------------NKLDNLRVIG 549 + C K++C + +L+V+G Sbjct 10974290 RSPCIMKLVCVGKEEKVRDVCFW*PFFFFYCFSCTKFCCFFFFV*LFVLT*TISSLQVVG 10974111 Query 550 FHYLGPNAGEVTQGFGAAMKCGITKDQLDNTIGIHPTCAEIFTTM 594 H G E+ QGF A+K G TK DNT+ IHPT +E F TM Sbjct 10974110 LHMQGLGCDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEEFVTM 10973976 > KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold23, whole genome shotgun sequence Length=30408201 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/64 (41%), Positives = 40/64 (63%), Gaps = 0/64 (0%) Frame = -1 Query 15 SKIKELIDSSAVVVFSKSFCPFCVKVKDLFKELNVKYNTIELDLMEDGTNYQDLLHEMTG 74 S +E++ + VV+FSK+ CP+C K++F E+ Y IELD DG Q+ L ++TG Sbjct 22164123 SIFQEMVSQNCVVIFSKTTCPYCKMAKNVFNEIGANYRVIELDQHNDGKRLQEALAQLTG 22163944 Query 75 QKTV 78 +TV Sbjct 22163943 VRTV 22163932 > KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold24, whole genome shotgun sequence Length=55650406 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/97 (33%), Positives = 49/97 (51%), Gaps = 14/97 (14%) Frame = -2 Query 26 VVVFSKSFCPFCVKVKDLFKELNVKYNTIELDLMEDGTNYQDLLHEMTGQKTVPNVFINK 85 V V+S CP CV+ K + L V +++ L + + L E+TG+ TVP +F N Sbjct 31801392 VTVYSIQGCPHCVQAKATLRSLGVPVCEVDVGLHSE---LRVKLKELTGRSTVPQIFFNN 31801222 Query 86 KHIGGCDNTMKAHKDGVLQKLLGEGSE--VYDYDLIV 120 H+GG D+ LQKL+ + +Y DLI+ Sbjct 31801221 IHVGGNDD---------LQKLVSRTNI**LYTVDLIL 31801138 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/63 (32%), Positives = 29/63 (46%), Gaps = 3/63 (5%) Frame = -2 Query 17 IKELIDSSAVVVFSKSFCPFCVKVKDLFKELNVK---YNTIELDLMEDGTNYQDLLHEMT 73 +K I VVVF K CP+CV +++F + K I + D + QD E T Sbjct 10810641 VKAQIKGDKVVVFLKPSCPYCVVAQEVFSQYQFKPGHLECINISGRSDMNSLQDYFLETT 10810462 Query 74 GQK 76 G + Sbjct 10810461 GAR 10810453 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/30 (73%), Positives = 25/30 (83%), Gaps = 0/30 (0%) Frame = -1 Query 306 VALECGGFLAGLGLDVTIMVRSILLRGFDQ 335 VALEC GFL G+GLD T+MVRS LRGFD+ Sbjct 6655807 VALECAGFLTGIGLDATVMVRSDALRGFDR 6655718 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/48 (46%), Positives = 33/48 (69%), Gaps = 0/48 (0%) Frame = -1 Query 402 AVGRDACTGKIGLDKAGVKINEKNGKVPVNDEEQTNVPHIYAIGDILE 449 + GR T +GLDK V++N++ GK+ V +E T+VP++YA GDI E Sbjct 6648922 SAGRAPETKTLGLDKLAVQLNQETGKIVVGPDESTSVPNVYAFGDIGE 6648779 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 28/44 (64%), Gaps = 0/44 (0%) Frame = -3 Query 568 MKCGITKDQLDNTIGIHPTCAEIFTTMEVTKSSGGDITQSGCUG 611 ++CG T L T+GIHPTCAE + +TK SG D T +GC G Sbjct 6637034 LRCGATYPHLLQTVGIHPTCAEEVVKIHITKRSGLDPTVTGC*G 6636903 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 15/36 (42%), Positives = 25/36 (69%), Gaps = 0/36 (0%) Frame = -1 Query 534 YAKIICNKLDNLRVIGFHYLGPNAGEVTQGFGAAMK 569 Y ++IC + + +++G H GPNAGEV QGF +++ Sbjct 6638200 YLQVICERGGDQKILGLHLTGPNAGEVIQGFSMSLQ 6638093 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/40 (48%), Positives = 25/40 (63%), Gaps = 0/40 (0%) Frame = -3 Query 481 NVPTTVFTPMEYGSCGHPEEKAIQMYGQENLEVYHSLFWP 520 V TTVFTP+EYG G EE+A + G++ +EV L P Sbjct 6642137 QVATTVFTPLEYGCVGLSEEEAERRRGKDGIEVGSVLLIP 6642018 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 0/28 (0%) Frame = -3 Query 510 NLEVYHSLFWPLEFTVPGRDNNKCYAKI 537 +L V+H+ + PLEFTV RD ++CY K+ Sbjct 6639560 SL*VFHAFYKPLEFTVAERDASRCYVKV 6639477 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 20/36 (56%), Positives = 25/36 (69%), Gaps = 0/36 (0%) Frame = -3 Query 447 ILEGKWELTPVAIQAGKLLARRLYAGATMKCDYVNV 482 +L G+ ELTP AI+AGKLLA RL +T +Y NV Sbjct 6643463 LL*GRPELTPTAIKAGKLLAHRLAGQSTDLMNYDNV 6643356 Lambda K H a alpha 0.318 0.137 0.417 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 114050272707 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40