TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000660_2.0 # Protein # Thioredoxin reductase 2 (TXNRD2) # Zebrafish Length=486 Score E Sequences producing significant alignments: (Bits) Value KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 91.3 2e-27 KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 100 1e-20 KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 62.8 9e-09 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 91.3 bits (225), Expect(2) = 2e-27, Method: Compositional matrix adjust. Identities = 40/62 (65%), Positives = 49/62 (79%), Gaps = 0/62 (0%) Frame = -3 Query 220 QQMSGLVTDYMETYGTKFHWKCTPKSVEKLPSGHLQVTWMDLNTKEEHQDTFNSVLWAVG 279 QQM+GLVTDYME YGT+F W+ PK V++LP G LQVTW D T EH+DT++SVLWAVG Sbjct 6655619 QQMAGLVTDYMEAYGTRFVWRSVPKRVDRLPLGTLQVTWSDTETGREHRDTYDSVLWAVG 6655440 Query 280 RA 281 + Sbjct 6655439 ES 6655434 Score = 54.3 bits (129), Expect(2) = 2e-27, Method: Compositional matrix adjust. Identities = 25/30 (83%), Positives = 28/30 (93%), Gaps = 0/30 (0%) Frame = -1 Query 191 VSLECAGFLTGIGLDTSVMVRSIALRGFDQ 220 V+LECAGFLTGIGLD +VMVRS ALRGFD+ Sbjct 6655807 VALECAGFLTGIGLDATVMVRSDALRGFDR 6655718 Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 35/58 (60%), Positives = 45/58 (78%), Gaps = 2/58 (3%) Frame = -1 Query 267 HQDTFNSVLWAVGRAPETKTLNLEKVGVKINKETGKIIVAADEATSVPNIFAIGDIGE 324 H TF + GRAPETKTL L+K+ V++N+ETGKI+V DE+TSVPN++A GDIGE Sbjct 6648946 HISTFAG--SSAGRAPETKTLGLDKLAVQLNQETGKIVVGPDESTSVPNVYAFGDIGE 6648779 Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 32/44 (73%), Positives = 36/44 (82%), Gaps = 0/44 (0%) Frame = -3 Query 443 FQCGLTYEHLRNTVGIHPTCAEELTKLNITKRSGLDATVTGCXG 486 +CG TY HL TVGIHPTCAEE+ K++ITKRSGLD TVTGC G Sbjct 6637034 LRCGATYPHLLQTVGIHPTCAEEVVKIHITKRSGLDPTVTGC*G 6636903 Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 30/33 (91%), Positives = 33/33 (100%), Gaps = 0/33 (0%) Frame = -3 Query 325 GRPELTPTAIKAGKLLAHRLAGRSTELMNYENV 357 GRPELTPTAIKAGKLLAHRLAG+ST+LMNY+NV Sbjct 6643454 GRPELTPTAIKAGKLLAHRLAGQSTDLMNYDNV 6643356 Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/40 (78%), Positives = 31/40 (78%), Gaps = 0/40 (0%) Frame = -3 Query 356 NVATTVFTPLEYGCVGLSEEEAERRHGKDQIEVYHAFYKP 395 VATTVFTPLEYGCVGLSEEEAERR GKD IEV P Sbjct 6642137 QVATTVFTPLEYGCVGLSEEEAERRRGKDGIEVGSVLLIP 6642018 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 23/36 (64%), Positives = 30/36 (83%), Gaps = 0/36 (0%) Frame = -1 Query 409 YIKVVCLREGDQRVLGLHFTGPNAGEVTQGFALGFQ 444 Y++V+C R GDQ++LGLH TGPNAGEV QGF++ Q Sbjct 6638200 YLQVICERGGDQKILGLHLTGPNAGEVIQGFSMSLQ 6638093 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/39 (64%), Positives = 31/39 (79%), Gaps = 2/39 (5%) Frame = -3 Query 388 VYHAFYKPLEFTVAERDATQCYIKVVCLREGDQRVLGLH 426 V+HAFYKPLEFTVAERDA++CY+KV EG +L +H Sbjct 6639551 VFHAFYKPLEFTVAERDASRCYVKVT--PEGHPIILTVH 6639441 Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/28 (64%), Positives = 25/28 (89%), Gaps = 0/28 (0%) Frame = -2 Query 112 KKVKYLNMKGTLLDKHTVRAVNAQGKEM 139 +KVKYLN+KG+LLD+HTVR ++ GKE+ Sbjct 6662748 RKVKYLNLKGSLLDEHTVRGLSKAGKEV 6662665 Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust. Identities = 18/25 (72%), Positives = 22/25 (88%), Gaps = 0/25 (0%) Frame = -1 Query 159 HVPGAMEFGITSDDIFWLKESPKKT 183 +PGA+E GITSDDIFWL++SP KT Sbjct 6661177 QIPGAVEHGITSDDIFWLEKSPGKT 6661103 Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust. Identities = 15/23 (65%), Positives = 20/23 (87%), Gaps = 0/23 (0%) Frame = -1 Query 138 EMTVTARNILLATGGRPKYPTHV 160 + +TA+NI++ATGGRPKYPT V Sbjct 6661870 QTVLTAKNIVIATGGRPKYPTEV 6661802 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 48/79 (61%), Positives = 57/79 (72%), Gaps = 0/79 (0%) Frame = -2 Query 168 ITSDDIFWLKESPKKTLIIGASYVSLECAGFLTGIGLDTSVMVRSIALRGFDQQMSGLVT 227 TSDD+F L P KTL+IGASYV+LEC GFL G+GLD +VMVRSI LRGFDQ+M+ Sbjct 2583708 FTSDDLFSLSYCPGKTLVIGASYVALECGGFLAGLGLDVTVMVRSILLRGFDQEMANRAG 2583529 Query 228 DYMETYGTKFHWKCTPKSV 246 +MET+G KF K P V Sbjct 2583528 AHMETHGVKFIRKFVPTKV 2583472 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 55/104 (53%), Gaps = 26/104 (25%) Frame = -3 Query 387 EVYHAFYKPLEFTVAERDATQCYIKVVC--------------------------LREGDQ 420 +VYH+ + PLEFTV RD QCY K++C + Sbjct 2579717 QVYHSLFWPLEFTVPSRDNNQCYAKIICNKLDSVRFQ*IYPPLSTVLSSQFIVFIVAFQD 2579538 Query 421 RVLGLHFTGPNAGEVTQGFALGFQCGLTYEHLRNTVGIHPTCAE 464 RV+G H+ GPNAGEVTQGF +CG T EH T+GIHPTCAE Sbjct 2579537 RVIGFHYLGPNAGEVTQGFGAAMKCGATKEHFDATIGIHPTCAE 2579406 Score = 59.7 bits (143), Expect(2) = 4e-16, Method: Compositional matrix adjust. Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 0/50 (0%) Frame = -3 Query 300 TGKIIVAADEATSVPNIFAIGDIGEGRPELTPTAIKAGKLLAHRLAGRST 349 GKI V +E T+VP+I+AIGDI E + ELTP AI+AGKLLA RL G ST Sbjct 2581265 NGKIPVNDEEQTNVPHIYAIGDILEEKWELTPVAIQAGKLLARRLYGGST 2581116 Score = 48.1 bits (113), Expect(2) = 4e-16, Method: Compositional matrix adjust. Identities = 23/36 (64%), Positives = 26/36 (72%), Gaps = 0/36 (0%) Frame = -1 Query 353 NYENVATTVFTPLEYGCVGLSEEEAERRHGKDQIEV 388 +Y +V TTVFTPLEYG GLSEE A +G D IEV Sbjct 2581024 DYIHVPTTVFTPLEYGACGLSEERATELYGPDNIEV 2580917 > KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Length=30170098 Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 82/224 (37%), Gaps = 88/224 (39%) Frame = -3 Query 333 AIKAGKLLAHRL-AGRSTELMNYENVATTVFTPLEYGCVGLSE----------------- 374 AI AG+ LAHRL G+ ++Y ++ T VF+ G VG +E Sbjct 10974644 AIAAGRKLAHRLFEGKKDSKLDYSSIPTVVFSHPPIGTVGPTEGDYSCILNDFTFSILYY 10974465 Query 375 -----------------------------EEAERRHGKDQIEVYHAFYKPLEFTVAERDA 405 EEA + HGK+ +++Y + P+ + R Sbjct 10974464 LIFW*ISQHS*LH*ANQHDKCVLVHILLSEEAVKSHGKENVKIYKTSFTPMYHAITSR-R 10974288 Query 406 TQCYIKVVCLREGDQ----------------------------------------RVLGL 425 + C +K+VC+ + ++ +V+GL Sbjct 10974287 SPCIMKLVCVGKEEKVRDVCFW*PFFFFYCFSCTKFCCFFFFV*LFVLT*TISSLQVVGL 10974108 Query 426 HFTGPNAGEVTQGFALGFQCGLTYEHLRNTVGIHPTCAEELTKL 469 H G E+ QGFA+ + G T NTV IHPT +EE + Sbjct 10974107 HMQGLGCDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEEFVTM 10973976 Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust. Identities = 28/81 (35%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Frame = -1 Query 214 ALRGFDQQMSGLVTDYMETYGTKFHWKCTPKSVEKLPSGHLQVTWM--DLNTKEEHQDTF 271 LR FD +S T ++ G KSV K G L+VT + D +E T Sbjct 10977316 VLRNFDAFISANCTKELQNNGIDLWKNSQVKSVSKTDKG-LEVTIVTKDPEKNDEKISTI 10977140 Query 272 NSV---LWAVGRAPETKTLNL 289 V LWA+GR P T LN+ Sbjct 10977139 EEVECLLWAIGRQPNTSGLNI 10977077 Lambda K H a alpha 0.317 0.135 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 85006432440 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40