TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000632_2.0 # Protein # 15 kDa selenoprotein (Sel15) # Zebrafish

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  85.5    7e-18
  KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  72.0    2e-13


> KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold24, 
whole genome shotgun sequence
Length=55650406

 Score = 85.5 bits (210),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 40/44 (91%), Positives = 43/44 (98%), Gaps = 0/44 (0%)
 Frame = +3

Query  103      KYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI  146
                +YVRGSDP+LKLLDDNGNIAEELSI KWNTDSVEEFLSEKL+RI
Sbjct  3581196  QYVRGSDPILKLLDDNGNIAEELSITKWNTDSVEEFLSEKLDRI  3581327


 Score = 45.8 bits (107),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 36/88 (41%), Gaps = 49/88 (56%)
 Frame = +1

Query  65       KLYPGAILEVCGXKLGRFPQVQ--------------------------------------  86
                +LY GAILEVCG KLGRFPQVQ                                      
Sbjct  3580321  QLYAGAILEVCG*KLGRFPQVQGKFWEEKLVQTSICYLVTSAVSPQLFLPHSQDVRPSVR  3580500

Query  87       -----------AFVRSDKPKLFRGLQIK  103
                           AFVRS+ PK+F+GLQIK
Sbjct  3580501  PHDLCLCFFPSAFVRSEMPKMFKGLQIK  3580584


> KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold20, 
whole genome shotgun sequence
Length=29933922

 Score = 72.0 bits (175),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 57/68 (84%), Gaps = 0/68 (0%)
 Frame = +3

Query  2        FLLVFFAQLASYGAELSSEACRELGFssnllcsscellGQFSLNQLDLPCRQCCQEEAQL  61
                 L   F QL++YGA+LSSEACRELGFSSNLLCSSC+LLG+FSL +L   CRQCCQ+EAQ+
Sbjct  2809353  HLTCVFLQLSAYGADLSSEACRELGFSSNLLCSSCDLLGEFSLTKLQPVCRQCCQQEAQM  2809532

Query  62       ENRKLYPG  69
                E+RK+  G
Sbjct  2809533  ESRKVKQG  2809556



Lambda      K        H        a         alpha
   0.322    0.140    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 8736787948


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40