TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000630_2.0 # Protein # Selenophosphate synthetase 2 (SEPHS2) # Zebrafish Length=447 Score E Sequences producing significant alignments: (Bits) Value KQ557212.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 101 4e-41 KQ557201.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 125 6e-29 KQ557205.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 34.3 4.7 > KQ557212.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold11, whole genome shotgun sequence Length=29398440 Score = 101 bits (251), Expect(2) = 4e-41, Method: Compositional matrix adjust. Identities = 54/101 (53%), Positives = 60/101 (59%), Gaps = 32/101 (32%) Frame = -1 Query 224 PDGAVPGDVLVLTKPLGTQVAVNAHQWLDI------------------------------ 253 PD AVPGDVLVLTKPLGTQVAV HQWLDI Sbjct 13136220 PDNAVPGDVLVLTKPLGTQVAVAVHQWLDIVSLSNCIFLSFCLGIPSAIS*RTFLFAFLN 13136041 Query 254 --PEKWNKIKLVISREEVEQAYQEAMLNMATLNRTAAALMH 292 PEKWNKIKLV+++E+VE AY EAMLNMA LNRT ++H Sbjct 13136040 I*PEKWNKIKLVVTQEDVELAYHEAMLNMARLNRTGKPIIH 13135918 Score = 90.5 bits (223), Expect(2) = 4e-41, Method: Compositional matrix adjust. Identities = 38/65 (58%), Positives = 56/65 (86%), Gaps = 0/65 (0%) Frame = -2 Query 159 LMLLSVSQKMNEKERDLVLPLMMKGFRDAAEEGGTSVTGGQTVINPWIIIGGVASVVCQP 218 + LL + + + +ERD V+PL+++GF+DA+EE GTSVTGGQTV+NPW+++GGVA+ VCQP Sbjct 13136513 VFLLHLLKCVCLQERDKVMPLIIQGFKDASEEAGTSVTGGQTVVNPWVVMGGVATTVCQP 13136334 Query 219 NDFIL 223 N+FI+ Sbjct 13136333 NEFIM 13136319 Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 52/72 (72%), Positives = 66/72 (92%), Gaps = 0/72 (0%) Frame = -1 Query 287 AAALMHKFNAHAATDITGFGIIGHARNLAKQQKNDVAFVIHNLPIISKMAAISKAGGNLF 346 AA+LMH FNAHAATDITGFGI+GHA+ LA+QQ+++V+FVIHNLP+++KMAA+SKA GN+F Sbjct 13135536 AASLMHTFNAHAATDITGFGILGHAQTLARQQRSEVSFVIHNLPVLAKMAAVSKACGNMF 13135357 Query 347 GLLQGTSSETSG 358 GL+ GT ETSG Sbjct 13135356 GLMHGTCPETSG 13135321 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/75 (60%), Positives = 50/75 (67%), Gaps = 11/75 (15%) Frame = -3 Query 357 SGGLLICLPREQAARFCAEMKSSRMgllgagqdggvgdgqqaWIIGIVEKGNRCARIIDK 416 GGLLICLPREQAARFCAE+KS + G WIIGIVEKGNR ARIIDK Sbjct 13134388 KGGLLICLPREQAARFCAEIKSPKYGEGHQA-----------WIIGIVEKGNRTARIIDK 13134242 Query 417 PRIIEVPYRGSVVSV 431 PRIIEV + + +V Sbjct 13134241 PRIIEVAPQAATQNV 13134197 Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 30/35 (86%), Positives = 34/35 (97%), Gaps = 0/35 (0%) Frame = -1 Query 101 GIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM 135 GIGMD+CVIPLRHGGLSLVQTTD+ YP+V+DPYMM Sbjct 13137414 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM 13137310 Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 39/58 (67%), Positives = 42/58 (72%), Gaps = 2/58 (3%) Frame = -1 Query 116 LSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEKER 173 LSL T F V + GRIACANVLSDLYAMG+TECDNMLMLL VS KM+EK R Sbjct 13136985 LSLCSTNSFCG*FV--SAL*GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMSEKVR 13136818 Score = 43.5 bits (101), Expect(2) = 0.001, Method: Compositional matrix adjust. Identities = 16/29 (55%), Positives = 23/29 (79%), Gaps = 0/29 (0%) Frame = -3 Query 26 QALNPEEHGLDRGFRLTAFSDMKGXGCKV 54 ++ NPE + LD+ FRLT F+++KG GCKV Sbjct 13138075 ESFNPESYELDKNFRLTRFAELKGTGCKV 13137989 Score = 21.2 bits (43), Expect(2) = 0.001, Method: Compositional matrix adjust. Identities = 9/17 (53%), Positives = 12/17 (71%), Gaps = 0/17 (0%) Frame = -2 Query 54 VPQETLLKLLQGLEPDR 70 VPQE L KLL+ L+ + Sbjct 13137893 VPQEVLQKLLEALQENH 13137843 > KQ557201.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold0, whole genome shotgun sequence Length=29966060 Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 58/77 (75%), Positives = 69/77 (90%), Gaps = 0/77 (0%) Frame = +2 Query 287 AAALMHKFNAHAATDITGFGIIGHARNLAKQQKNDVAFVIHNLPIISKMAAISKAGGNLF 346 AA+LMHK+ AHAATD+TGFG++GHA NLA+QQKN+VAFVIHNLPII+KM+AISKA GNLF Sbjct 4464719 AASLMHKYQAHAATDVTGFGLLGHANNLAEQQKNEVAFVIHNLPIIAKMSAISKACGNLF 4464898 Query 347 GLLQGTSSETSGGLLIC 363 LLQG S+ETSG + C Sbjct 4464899 NLLQGRSAETSGKRMTC 4464949 Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 44/53 (83%), Positives = 51/53 (96%), Gaps = 0/53 (0%) Frame = +2 Query 171 KERDLVLPLMMKGFRDAAEEGGTSVTGGQTVINPWIIIGGVASVVCQPNDFIL 223 ++R+ V PLM+KGFRDAAEEGGTSVTGGQTVINPWII+GGVASVVCQPN+FI+ Sbjct 4462550 QDRERVTPLMIKGFRDAAEEGGTSVTGGQTVINPWIIVGGVASVVCQPNEFIM 4462708 Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/85 (59%), Positives = 58/85 (68%), Gaps = 9/85 (11%) Frame = +2 Query 357 SGGLLICLPREQAARFCAEMKSSRMgllgagqdggvgdgqqaWIIGIVEKGNRCARIIDK 416 +GGLL+CLPREQAA+FC+EMKS + G AWIIGIVEKG+R ARIIDK Sbjct 4465760 TGGLLVCLPREQAAKFCSEMKS---------LNSAQGASNGAWIIGIVEKGDRRARIIDK 4465912 Query 417 PRIIEVPYRGSVVSVQEGSNNNASP 441 PRIIEVP RGS + Q+ S N P Sbjct 4465913 PRIIEVPARGSQAANQDNSTANPDP 4465987 Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 34/50 (68%), Positives = 42/50 (84%), Gaps = 0/50 (0%) Frame = +1 Query 21 YPAGYQALNPEEHGLDRGFRLTAFSDMKGXGCKVPQETLLKLLQGLEPDR 70 +P GY+ PE+HGL+RGFRLT++S++KG GCKVPQE LLKLL GLE DR Sbjct 4458823 FPPGYKPFKPEDHGLERGFRLTSYSELKG*GCKVPQEVLLKLLAGLETDR 4458972 Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 35/41 (85%), Positives = 35/41 (85%), Gaps = 0/41 (0%) Frame = +3 Query 101 GIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACA 141 GIGMDSCV PLRHGGLSLVQTTDFFYPLVEDPYMM C Sbjct 4459482 GIGMDSCVTPLRHGGLSLVQTTDFFYPLVEDPYMMVSFCCG 4459604 Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 35/36 (97%), Positives = 36/36 (100%), Gaps = 0/36 (0%) Frame = +3 Query 136 GRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEK 171 GRIACANVLSDLYAMGITECDNMLMLLS+SQKMNEK Sbjct 4462296 GRIACANVLSDLYAMGITECDNMLMLLSLSQKMNEK 4462403 Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/29 (97%), Positives = 29/29 (100%), Gaps = 0/29 (0%) Frame = +3 Query 224 PDGAVPGDVLVLTKPLGTQVAVNAHQWLD 252 PDGAVPGDVLVLTKPLGT+VAVNAHQWLD Sbjct 4463295 PDGAVPGDVLVLTKPLGTRVAVNAHQWLD 4463381 Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 25/39 (64%), Positives = 32/39 (82%), Gaps = 0/39 (0%) Frame = +1 Query 251 LDIPEKWNKIKLVISREEVEQAYQEAMLNMATLNRTAAA 289 L PEKWN+IKLV+++EEV++AY EAM +MATLNRT Sbjct 4464460 LHQPEKWNRIKLVVTKEEVKEAYYEAMFSMATLNRTGTT 4464576 > KQ557205.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold4, whole genome shotgun sequence Length=26266306 Score = 34.3 bits (77), Expect = 4.7, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 0/51 (0%) Frame = -2 Query 112 RHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLL 162 R S Q +D F +DPY+ R AC + ++ +A+ C ++ LL Sbjct 748185 RESSCSRNQNSDIFLSETQDPYLCFRNACCHKMNSCFAVMKIRCADVAQLL 748033 Lambda K H a alpha 0.320 0.137 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 76033539288 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40