TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000629_2.0 # Protein # Selenophosphate synthetase (SEPHS) # Zebrafish Length=392 Score E Sequences producing significant alignments: (Bits) Value KQ557212.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 117 3e-51 KQ557201.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 118 1e-26 KQ557205.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 33.5 6.3 > KQ557212.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold11, whole genome shotgun sequence Length=29398440 Score = 117 bits (293), Expect(2) = 3e-51, Method: Compositional matrix adjust. Identities = 63/101 (62%), Positives = 65/101 (64%), Gaps = 32/101 (32%) Frame = -1 Query 188 PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI------------------------------ 217 PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI Sbjct 13136220 PDNAVPGDVLVLTKPLGTQVAVAVHQWLDIVSLSNCIFLSFCLGIPSAIS*RTFLFAFLN 13136041 Query 218 --PEKWNKIKLVVTQEDVELAYQEAMLNMARLNRTAAGLMH 256 PEKWNKIKLVVTQEDVELAY EAMLNMARLNRT ++H Sbjct 13136040 I*PEKWNKIKLVVTQEDVELAYHEAMLNMARLNRTGKPIIH 13135918 Score = 107 bits (268), Expect(2) = 3e-51, Method: Compositional matrix adjust. Identities = 48/53 (91%), Positives = 53/53 (100%), Gaps = 0/53 (0%) Frame = -2 Query 135 KERDKVMPLVIQGFKDASEEAGTSVTGGQTVINPWIVLGGVATTVCQPNEFIM 187 +ERDKVMPL+IQGFKDASEEAGTSVTGGQTV+NPW+V+GGVATTVCQPNEFIM Sbjct 13136477 QERDKVMPLIIQGFKDASEEAGTSVTGGQTVVNPWVVMGGVATTVCQPNEFIM 13136319 Score = 146 bits (369), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 69/72 (96%), Positives = 70/72 (97%), Gaps = 0/72 (0%) Frame = -1 Query 251 AAGLMHTFNAHAATDITGFGILGHAQNLARQQRTEVSFVIHNLPVLAKMAAVSKACGNMF 310 AA LMHTFNAHAATDITGFGILGHAQ LARQQR+EVSFVIHNLPVLAKMAAVSKACGNMF Sbjct 13135536 AASLMHTFNAHAATDITGFGILGHAQTLARQQRSEVSFVIHNLPVLAKMAAVSKACGNMF 13135357 Query 311 GLMHGTCPETSG 322 GLMHGTCPETSG Sbjct 13135356 GLMHGTCPETSG 13135321 Score = 146 bits (369), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 69/72 (96%), Positives = 69/72 (96%), Gaps = 0/72 (0%) Frame = -3 Query 321 SGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVA 380 GGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQ A Sbjct 13134388 KGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQAA 13134209 Query 381 TQNVNTTPGATS 392 TQNVN TPGATS Sbjct 13134208 TQNVNPTPGATS 13134173 Score = 71.2 bits (173), Expect(2) = 2e-25, Method: Compositional matrix adjust. Identities = 32/33 (97%), Positives = 32/33 (97%), Gaps = 0/33 (0%) Frame = -3 Query 1 MSVRESFNPESYELDKNFRLTRFTELKGTGCKV 33 MSVRESFNPESYELDKNFRLTRF ELKGTGCKV Sbjct 13138087 MSVRESFNPESYELDKNFRLTRFAELKGTGCKV 13137989 Score = 67.4 bits (163), Expect(2) = 2e-25, Method: Compositional matrix adjust. Identities = 31/33 (94%), Positives = 33/33 (100%), Gaps = 0/33 (0%) Frame = -2 Query 33 VPQDVLQKLLESLQENHYQEDEQFLGAVMPRLG 65 VPQ+VLQKLLE+LQENHYQEDEQFLGAVMPRLG Sbjct 13137893 VPQEVLQKLLEALQENHYQEDEQFLGAVMPRLG 13137795 Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/35 (100%), Positives = 35/35 (100%), Gaps = 0/35 (0%) Frame = -1 Query 65 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM 99 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM Sbjct 13137414 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM 13137310 Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 35/38 (92%), Positives = 37/38 (97%), Gaps = 0/38 (0%) Frame = -1 Query 100 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKLTEKER 137 GRIACANVLSDLYAMGVTECDNMLMLLGVSNK++EK R Sbjct 13136931 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMSEKVR 13136818 > KQ557201.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold0, whole genome shotgun sequence Length=29966060 Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 54/86 (63%), Positives = 67/86 (78%), Gaps = 4/86 (5%) Frame = +2 Query 251 AAGLMHTFNAHAATDITGFGILGHAQNLARQQRTEVSFVIHNLPVLAKMAAVSKACGNMF 310 AA LMH + AHAATD+TGFG+LGHA NLA QQ+ EV+FVIHNLP++AKM+A+SKACGN+F Sbjct 4464719 AASLMHKYQAHAATDVTGFGLLGHANNLAEQQKNEVAFVIHNLPIIAKMSAISKACGNLF 4464898 Query 311 GLMHGTCPETSGGLLICLPREQAARF 336 L+ G ETSG + C +AAR Sbjct 4464899 NLLQGRSAETSGKRMTC----RAARL 4464964 Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 39/53 (74%), Positives = 50/53 (94%), Gaps = 0/53 (0%) Frame = +2 Query 135 KERDKVMPLVIQGFKDASEEAGTSVTGGQTVINPWIVLGGVATTVCQPNEFIM 187 ++R++V PL+I+GF+DA+EE GTSVTGGQTVINPWI++GGVA+ VCQPNEFIM Sbjct 4462550 QDRERVTPLMIKGFRDAAEEGGTSVTGGQTVINPWIIVGGVASVVCQPNEFIM 4462708 Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 45/72 (63%), Positives = 55/72 (76%), Gaps = 5/72 (7%) Frame = +2 Query 321 SGGLLICLPREQAARFCAEIKSPKYGEG--HQAWIIGIVEKGNRTARIIDKPRIIEV--- 375 +GGLL+CLPREQAA+FC+E+KS +G + AWIIGIVEKG+R ARIIDKPRIIEV Sbjct 4465760 TGGLLVCLPREQAAKFCSEMKSLNSAQGASNGAWIIGIVEKGDRRARIIDKPRIIEVPAR 4465939 Query 376 APQVATQNVNTT 387 Q A Q+ +T Sbjct 4465940 GSQAANQDNSTA 4465975 Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 30/41 (73%), Positives = 34/41 (83%), Gaps = 0/41 (0%) Frame = +3 Query 65 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACA 105 GIGMD+CV PLRHGGLSLVQTTD+ YP+V+DPYMM C Sbjct 4459482 GIGMDSCVTPLRHGGLSLVQTTDFFYPLVEDPYMMVSFCCG 4459604 Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 32/45 (71%), Positives = 35/45 (78%), Gaps = 0/45 (0%) Frame = +3 Query 91 PIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKLTEK 135 VD GRIACANVLSDLYAMG+TECDNMLMLL +S K+ EK Sbjct 4462269 SFVDLAVSQGRIACANVLSDLYAMGITECDNMLMLLSLSQKMNEK 4462403 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 0/45 (0%) Frame = +1 Query 5 ESFNPESYELDKNFRLTRFTELKGTGCKVPQDVLQKLLESLQENH 49 + F PE + L++ FRLT ++ELKG GCKVPQ+VL KLL L+ + Sbjct 4458838 KPFKPEDHGLERGFRLTSYSELKG*GCKVPQEVLLKLLAGLETDR 4458972 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/37 (68%), Positives = 30/37 (81%), Gaps = 0/37 (0%) Frame = +1 Query 215 LDIPEKWNKIKLVVTQEDVELAYQEAMLNMARLNRTA 251 L PEKWN+IKLVVT+E+V+ AY EAM +MA LNRT Sbjct 4464460 LHQPEKWNRIKLVVTKEEVKEAYYEAMFSMATLNRTG 4464570 Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/29 (86%), Positives = 26/29 (90%), Gaps = 0/29 (0%) Frame = +3 Query 188 PDNAVPGDVLVLTKPLGTQVAVAVHQWLD 216 PD AVPGDVLVLTKPLGT+VAV HQWLD Sbjct 4463295 PDGAVPGDVLVLTKPLGTRVAVNAHQWLD 4463381 > KQ557205.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold4, whole genome shotgun sequence Length=26266306 Score = 33.5 bits (75), Expect = 6.3, Method: Compositional matrix adjust. Identities = 16/54 (30%), Positives = 25/54 (46%), Gaps = 0/54 (0%) Frame = -2 Query 76 RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVS 129 R S Q +D DPY+ R AC + ++ +A+ C ++ LLG S Sbjct 748185 RESSCSRNQNSDIFLSETQDPYLCFRNACCHKMNSCFAVMKIRCADVAQLLGKS 748024 Lambda K H a alpha 0.319 0.135 0.403 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 63282579772 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40