TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000659_2.0 # Protein # Selenoprotein W (SELENOW) # Zebrafish

Length=86
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  30.0    3.2  


> KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold20, 
whole genome shotgun sequence
Length=29933922

 Score = 30.0 bits (66),  Expect = 3.2, Method: Composition-based stats.
 Identities = 13/29 (45%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
 Frame = -2

Query  31      PNELEITGEGTPSTTGWLEVEVNGKLVHS  59
               PN +   G+   S TGWLEV++N  L+ S
Sbjct  141167  PNTVACFGDHLTSATGWLEVKLNKGLMQS  141081



Lambda      K        H        a         alpha
   0.313    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5903265100


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40