TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000658_2.0 # Protein # Selenoprotein W (SELENOW) # Zebrafish Length=94 Score E Sequences producing significant alignments: (Bits) Value KQ557208.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 40.8 5e-13 KQ557207.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 29.3 7.2 KQ557222.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 28.9 8.4 > KQ557208.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold7, whole genome shotgun sequence Length=25108055 Score = 40.8 bits (94), Expect(3) = 5e-13, Method: Compositional matrix adjust. Identities = 18/28 (64%), Positives = 22/28 (79%), Gaps = 0/28 (0%) Frame = -3 Query 42 RGCFEIQINDFLVFSKLESGGFPYSEDI 69 G FEI IN L+FSKLE+GGFPY +D+ Sbjct 20255811 TGSFEIVINGQLIFSKLETGGFPYEDDV 20255728 Score = 40.0 bits (92), Expect(3) = 5e-13, Method: Compositional matrix adjust. Identities = 19/34 (56%), Positives = 22/34 (65%), Gaps = 0/34 (0%) Frame = -1 Query 10 CGAXGYEPRFQELKREICGNCPDAEVSGFVGRRG 43 G GYEPR++EL PDA+VSGFVGR G Sbjct 20256023 SGG*GYEPRYRELASVAKSEFPDADVSGFVGRTG 20255922 Score = 31.6 bits (70), Expect(3) = 5e-13, Method: Composition-based stats. Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (4%) Frame = -2 Query 69 IIEAVVKAKDGKP-EKITRNRKECIIL 94 II AV A DGKP +KIT++R C+IL Sbjct 20255647 IINAVQAANDGKPVQKITKSRPPCVIL 20255567 Score = 43.5 bits (101), Expect(2) = 9e-10, Method: Compositional matrix adjust. Identities = 20/41 (49%), Positives = 25/41 (61%), Gaps = 0/41 (0%) Frame = -3 Query 11 GAXGYEPRFQELKREICGNCPDAEVSGFVGRRGCFEIQIND 51 G GY PR+ L R I G DAEV+GFVGRRG ++ + Sbjct 20258187 GG*GYRPRYAALARSIQGKFRDAEVTGFVGRRGKSQVMLTS 20258065 Score = 38.9 bits (89), Expect(2) = 9e-10, Method: Composition-based stats. Identities = 16/25 (64%), Positives = 21/25 (84%), Gaps = 0/25 (0%) Frame = -2 Query 45 FEIQINDFLVFSKLESGGFPYSEDI 69 +E++IN LVFSKLE+GGFP ED+ Sbjct 20257966 YEVEINGQLVFSKLETGGFPSEEDV 20257892 > KQ557207.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold6, whole genome shotgun sequence Length=23593460 Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 28/54 (52%), Gaps = 2/54 (4%) Frame = +2 Query 38 FVGRRGCFEIQINDFLVFSKLESGGFPYSEDIIEAVV-KAKDGKPEKITRNRKE 90 F R C + + FL+ S L++ +I +A+ K +D PEKI NRKE Sbjct 204146 FTEPRHCIMLYLFIFLIVSLLKASPVAV-RNISDAISEKVRDNGPEKIAENRKE 204304 > KQ557222.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold21, whole genome shotgun sequence Length=28200517 Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats. Identities = 16/49 (33%), Positives = 21/49 (43%), Gaps = 8/49 (16%) Frame = -2 Query 22 LKREICGNCPDA--------EVSGFVGRRGCFEIQINDFLVFSKLESGG 62 +K NC DA S F RRGC E+ + LV ++ S G Sbjct 18377103 VKSRAATNCSDACHTHLSS*RGSAFRARRGCVEVGFLEILVLTQTHSAG 18376957 Lambda K H a alpha 0.322 0.143 0.434 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5903260100 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40