TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000657_2.0 # Protein # Selenoprotein W (SELENOW) # Zebrafish

Length=95
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557208.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  51.6    9e-23


> KQ557208.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold7, 
whole genome shotgun sequence
Length=25108055

 Score = 51.6 bits (122),  Expect(3) = 9e-23, Method: Compositional matrix adjust.
 Identities = 24/27 (89%), Positives = 25/27 (93%), Gaps = 0/27 (0%)
 Frame = -3

Query  43        GSFEIEINGQLIFSKLETSGFPYEDDI  69
                 GSFEI INGQLIFSKLET GFPYEDD+
Sbjct  20255808  GSFEIVINGQLIFSKLETGGFPYEDDV  20255728


 Score = 50.8 bits (120),  Expect(3) = 9e-23, Method: Compositional matrix adjust.
 Identities = 24/34 (71%), Positives = 26/34 (76%), Gaps = 0/34 (0%)
 Frame = -1

Query  10        CGGXGYEPRYQELKRVVTAEFTDADVSGFVGRQG  43
                  GG GYEPRY+EL  V  +EF DADVSGFVGR G
Sbjct  20256023  SGG*GYEPRYRELASVAKSEFPDADVSGFVGRTG  20255922


 Score = 43.5 bits (101),  Expect(3) = 9e-23, Method: Composition-based stats.
 Identities = 18/27 (67%), Positives = 23/27 (85%), Gaps = 0/27 (0%)
 Frame = -2

Query  69        IMGVIQRAYDGQPVEKITKSQPPCVIL  95
                 I+  +Q A DG+PV+KITKS+PPCVIL
Sbjct  20255647  IINAVQAANDGKPVQKITKSRPPCVIL  20255567


 Score = 48.5 bits (114),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 21/44 (48%), Positives = 29/44 (66%), Gaps = 0/44 (0%)
 Frame = -3

Query  11        GGXGYEPRYQELKRVVTAEFTDADVSGFVGRQGSFEIEINGQLI  54
                 GG GY PRY  L R +  +F DA+V+GFVGR+G  ++ +  Q I
Sbjct  20258187  GG*GYRPRYAALARSIQGKFRDAEVTGFVGRRGKSQVMLTSQTI  20258056


 Score = 48.1 bits (113),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 32/90 (36%), Positives = 42/90 (47%), Gaps = 40/90 (44%)
 Frame = -2

Query  43        GSFEIEINGQLIFSKLETSGFPYEDDIMGV-------IQRAY------------------  77
                  S+E+EINGQL+FSKLET GFP E+D+  +       IQ +                   
Sbjct  20257972  ASYEVEINGQLVFSKLETGGFPSEEDVSILHTFSLL*IQNSLVCAMYLFYLLL*VLAAVQ  20257793

Query  78        ---DGQPVEKITKSQ------------PPC  92
                    DG+PV+KITK +            PPC
Sbjct  20257792  AAYDGKPVQKITKKR*SAVTSAA*WRAPPC  20257703



Lambda      K        H        a         alpha
   0.319    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5903259475


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40