TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000656_2.0 # Protein # Selenoprotein U3 (SELENOU3) # Zebrafish

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca...    110   5e-26
  KQ557215.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  36.2    0.021
  KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  33.5    1.3  


> KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, 
whole genome shotgun sequence
Length=28566418

 Score =   110 bits (275),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 48/67 (72%), Positives = 61/67 (91%), Gaps = 0/67 (0%)
 Frame = -1

Query  1         VEIGSLWREQAVVLFFLRRFGCQVCRWMAAEVSKLEKDLKAHGIALVGIGPEETGVKEFK  60
                 VE+ SLW+ Q VV+FFLRRFGCQVCRWMA+E+SKLE DL+A+G++L G+GPEE G++EFK
Sbjct  16879177  VELQSLWQNQPVVVFFLRRFGCQVCRWMASEISKLEPDLRANGVSLAGVGPEELGLQEFK  16878998

Query  61        DGGFFKG  67
                 +GGFFKG
Sbjct  16878997  EGGFFKG  16878977


 Score = 60.1 bits (144),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 28/39 (72%), Positives = 33/39 (85%), Gaps = 0/39 (0%)
 Frame = -2

Query  132       GGEKVLLHFIQKSPADNPPLEEITKALGISANVQAGEKP  170
                 GGEKVLLHFIQ SP D  PL++I+ ALGISA V+AG+KP
Sbjct  16876464  GGEKVLLHFIQDSPGDFVPLDDISTALGISATVKAGQKP  16876348


 Score = 45.4 bits (106),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 22/27 (81%), Positives = 25/27 (93%), Gaps = 0/27 (0%)
 Frame = -1

Query  106       KASAEGIQGNFSGDLLQSGGMLIVAKG  132
                 +ASA GIQGNFSGDLLQSGG++IV KG
Sbjct  16878004  QASAVGIQGNFSGDLLQSGGLIIVTKG  16877924


 Score = 37.7 bits (86),  Expect = 0.062, Method: Composition-based stats.
 Identities = 15/22 (68%), Positives = 21/22 (95%), Gaps = 0/22 (0%)
 Frame = -3

Query  85        RYNAINVVPAAMGKKVREIASK  106
                 RY A++V+PAA+GKKVR+I+SK
Sbjct  16878227  RYTALSVLPAALGKKVRDISSK  16878162


 Score = 37.4 bits (85),  Expect = 0.082, Method: Composition-based stats.
 Identities = 14/17 (82%), Positives = 16/17 (94%), Gaps = 0/17 (0%)
 Frame = -3

Query  69        IYIDEMKQCYKDLGFKR  85
                 IY+DE K+CYKDLGFKR
Sbjct  16878692  IYVDEEKKCYKDLGFKR  16878642


> KQ557215.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold14, 
whole genome shotgun sequence
Length=28402361

 Score = 36.2 bits (82),  Expect(2) = 0.021, Method: Compositional matrix adjust.
 Identities = 19/53 (36%), Positives = 31/53 (58%), Gaps = 4/53 (8%)
 Frame = +2

Query  29        AAEVSKLEKDLKAHGIALVGIGPEETG--VKEFKDGGFFKGDIYIDEMKQCYK  79
                 A+E+S L+  L+  G+ LV +  E  G  +++F+    F GDIY+DEM   + 
Sbjct  14670503  ASELSSLKPQLEELGVPLVAVVKENVGSEIQDFR--PHFAGDIYVDEMVSSWN  14670655


 Score = 21.2 bits (43),  Expect(2) = 0.021, Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
 Frame = +3

Query  5         SLWREQAVVLFFLRRFGCQVCRWMAAEVS  33
                 SLW +   V+  +RR G  +CR + ++++
Sbjct  14670348  SLWEKNGAVVMAVRRPG*FLCREVVSDLT  14670434


 Score = 31.2 bits (69),  Expect = 8.9, Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 0/26 (0%)
 Frame = +1

Query  18       RRFGCQVCRWMAAEVSKLEKDLKAHG  43
                R + C++C +  A+ SKL + +K HG
Sbjct  6296947  RPYKCELCNYACAQSSKLTRHMKTHG  6297024


> KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold13, 
whole genome shotgun sequence
Length=22457735

 Score = 33.5 bits (75),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (64%), Gaps = 4/47 (9%)
 Frame = +2

Query  126      MLIVAKGGEKVLLHFIQKSPADNPPLEEITKALGISANVQAGEKPQC  172
                +L+V++G E + +H  Q +P   PP  ++ + LGIS +V + E PQC
Sbjct  7956845  LLMVSRGLEVISIHN-QDNP---PPPSQVCRHLGISESVGSSEVPQC  7956973



Lambda      K        H        a         alpha
   0.319    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 15348403135


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40