TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000655_2.0 # Protein # Selenoprotein U2 (SELENOU2) # Zebrafish

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  87.0    1e-17


> KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, 
whole genome shotgun sequence
Length=33259606

 Score = 87.0 bits (214),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 70/113 (62%), Gaps = 29/113 (26%)
 Frame = +2

Query  139       SPHVKSSMLSGSLKSVWRAMTSPVfdfqgdpqqqggALIVGPGP----------------  182
                 SPHVKS +  G +KS+WRAMTSP FDFQGD  QQGGA+I GPG                 
Sbjct  22926068  SPHVKSGLFMGQIKSIWRAMTSPAFDFQGDLHQQGGAIIAGPGKV*ILSLQSYSFSSFIY  22926247

Query  183       ------------DVHFAHFDMNRLDHMPINWLLQLAGL-PALDFSDSPKIINI  222
                              V+F HFDMNRLDHMPI+WLLQLAG+  +LDFS  PKI+++
Sbjct  22926248  FYFSSLLLSAGSQVYFCHFDMNRLDHMPISWLLQLAGVQQSLDFSPKPKIMHV  22926406


 Score = 58.5 bits (140),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
 Frame = +1

Query  61        FLCYTCKEYVEDLGKIPQHV-LQDS--NVRLVVIGQSSYSHIQGFCSLTGFPHEIYVDPE  117
                 F C+TC  Y     ++  +  + DS   +   +    S + IQ FC LTG+ HEIYVDP+
Sbjct  22925641  FKCFTCDFYAVCPKRMSAYFSITDSFFKIHF*ISSLCSSTLIQPFCLLTGYSHEIYVDPK  22925820

Query  118       RQIYKRLGLRRGETYMETPSVSPHVK  143
                 R IY +LG++R ET+ ++ ++   +K
Sbjct  22925821  RSIYLKLGMKREETFTDSGNIFMSLK  22925898


 Score = 48.5 bits (114),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 0/56 (0%)
 Frame = +2

Query  3         VHPITRQISSSVQDNKQASHNICLSELKNCFIFDRHGDKKSFSSLFEHNKAIVIFV  58
                 V PITRQ+S+       A  +I L ++++C I+DR G    F SL++ +K+++IFV
Sbjct  22924442  VSPITRQVSTEKWKAGTAVADINLKDVEDCLIYDRRGVSFLFKSLYQDSKSVIIFV  22924609


 Score = 39.3 bits (90),  Expect = 0.033, Method: Compositional matrix adjust.
 Identities = 15/26 (58%), Positives = 22/26 (85%), Gaps = 0/26 (0%)
 Frame = +2

Query  59        RHFLCYTCKEYVEDLGKIPQHVLQDS  84
                 ++FLCY+CKEYV+DL K+P+  L+ S
Sbjct  22924865  QNFLCYSCKEYVDDLSKVPRGALEVS  22924942



Lambda      K        H        a         alpha
   0.323    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 24793566420


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40