TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000652_2.0 # Protein # Selenoprotein U1a (SELENOU1a) # Zebrafish Length=222 Score E Sequences producing significant alignments: (Bits) Value KQ557215.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 86.7 2e-27 KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 41.2 0.008 > KQ557215.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold14, whole genome shotgun sequence Length=28402361 Score = 86.7 bits (213), Expect(2) = 2e-27, Method: Compositional matrix adjust. Identities = 42/66 (64%), Positives = 52/66 (79%), Gaps = 0/66 (0%) Frame = +2 Query 94 EASELSSLKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEKQAFYGPQQRKMGG 153 EASELSSLKPQL+ELGVPL AVVKENVG+EIQDFRPHFAG+I++DE + + + Sbjct 14670500 EASELSSLKPQLEELGVPLVAVVKENVGSEIQDFRPHFAGDIYVDEMVSSWNLNVLTVQP 14670679 Query 154 LGFIRL 159 L ++ L Sbjct 14670680 LKYLNL 14670697 Score = 57.0 bits (136), Expect(2) = 2e-27, Method: Compositional matrix adjust. Identities = 25/37 (68%), Positives = 32/37 (86%), Gaps = 0/37 (0%) Frame = +3 Query 63 DERSLKAKALWEKSGAVIMAVRRPGXFLCREEASELS 99 D + +KAK+LWEK+GAV+MAVRRPG FLCRE S+L+ Sbjct 14670324 DGKVIKAKSLWEKNGAVVMAVRRPG*FLCREVVSDLT 14670434 Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 38/42 (90%), Positives = 40/42 (95%), Gaps = 0/42 (0%) Frame = +3 Query 143 FYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFIL 184 FYGP QRKMGGLGFIRLGVWQNF+RAWR+GYQGNM GEGFIL Sbjct 14670918 FYGPLQRKMGGLGFIRLGVWQNFIRAWRSGYQGNMLGEGFIL 14671043 Score = 38.9 bits (89), Expect = 0.043, Method: Composition-based stats. Identities = 35/62 (56%), Positives = 46/62 (74%), Gaps = 1/62 (2%) Frame = +3 Query 8 FEGETLAMGMWSlglgavgaaiaglilaNTDFLLTKSAPATVDYLANADLK-TIDGDERS 66 EG + MGMWSLG+GAVGAA+AG+ LANTD L K A A++++L +ADL+ T DG S Sbjct 14669700 LEGGLIEMGMWSLGIGAVGAALAGIFLANTDMCLPKGASASLEHLEDADLRSTTDGKMMS 14669879 Query 67 LK 68 +K Sbjct 14669880 IK 14669885 Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust. Identities = 16/25 (64%), Positives = 21/25 (84%), Gaps = 0/25 (0%) Frame = +1 Query 198 LLEHREKEFGDKVSLESVLEAAKKV 222 LLEH+EK+FGDKV VL+AA+K+ Sbjct 14671186 LLEHKEKQFGDKVDTADVLKAAQKI 14671260 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/64 (36%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Frame = -1 Query 65 RSLKAKALWEKSGAVIMAVRRPGXFLCREEASELSSLKPQLDELGVPLYAVVKENVGTEI 124 + ++ ++LW+ V+ +RR G +CR ASE+S L+P L GV L V E +G + Sbjct 16879183 QKVELQSLWQNQPVVVFFLRRFGCQVCRWMASEISKLEPDLRANGVSLAGVGPEELG--L 16879010 Query 125 QDFR 128 Q+F+ Sbjct 16879009 QEFK 16878998 Lambda K H a alpha 0.319 0.137 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24793566420 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40