TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000650_2.0 # Protein # Selenoprotein T2 (SELENOT2) # Zebrafish Length=210 Score E Sequences producing significant alignments: (Bits) Value KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 80.9 2e-43 KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 62.4 7e-10 KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 37.0 0.18 > KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Length=30170098 Score = 80.9 bits (198), Expect(3) = 2e-43, Method: Compositional matrix adjust. Identities = 50/93 (54%), Positives = 61/93 (66%), Gaps = 21/93 (23%) Frame = +3 Query 99 KYLGNFLSYFKLLAIALIVTGQNPFQMFGMNTPRIWAWGQENK----------------- 141 + +GN +SY KLL+I LI++GQNPF + G +TP +W W Q NK Sbjct 708237 RLVGNLVSYLKLLSILLIISGQNPFPLLGTDTPAVWTWTQNNKVPNLLCCCRSNTC*RWH 708416 Query 142 ----IFSCLMAFFISNMLETHFLSTGAFEITLN 170 IFSCLMAFFISNM+ETHFLSTGAFE+TLN Sbjct 708417 SCFQIFSCLMAFFISNMMETHFLSTGAFEVTLN 708515 Score = 72.8 bits (177), Expect(3) = 2e-43, Method: Compositional matrix adjust. Identities = 30/39 (77%), Positives = 36/39 (92%), Gaps = 0/39 (0%) Frame = +2 Query 171 DIPIWSKLQSGYVPNIQELFQILDNHLKMNQADKMNFPS 209 D+P+WSKLQSGYVPNIQE+F+ILD HLKMNQAD++ F S Sbjct 708578 DVPVWSKLQSGYVPNIQEMFRILDTHLKMNQADRVTFTS 708694 Score = 64.3 bits (155), Expect(3) = 2e-43, Method: Compositional matrix adjust. Identities = 28/38 (74%), Positives = 35/38 (92%), Gaps = 0/38 (0%) Frame = +1 Query 62 CISXGYSKVFQEYSRSISQLYPDIRIEGDNYPPKPINK 99 IS GYSKVFQEYS++ISQ+YPDIRI+G+NYPP P+N+ Sbjct 708046 SIS*GYSKVFQEYSQAISQVYPDIRIQGENYPPTPLNR 708159 Score = 34.7 bits (78), Expect = 0.82, Method: Compositional matrix adjust. Identities = 25/61 (41%), Positives = 39/61 (64%), Gaps = 0/61 (0%) Frame = +1 Query 1 MAEYSQTGIltalllftvvtvKDIYVGRNSVTQQENTGPDINTQRQNKHTFYTGPVLKFQ 60 MAE+ G+L ALLLFT +T++D+YVGR+ + + + + K Y+GPVL+F+ Sbjct 706186 MAEFGSGGLLAALLLFTALTLRDVYVGRSDHRTRAFAETEPESGKPPKAALYSGPVLQFR 706365 Query 61 Y 61 Y Sbjct 706366 Y 706368 > KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold20, whole genome shotgun sequence Length=29933922 Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 23/45 (51%), Positives = 35/45 (78%), Gaps = 0/45 (0%) Frame = -3 Query 98 NKYLGNFLSYFKLLAIALIVTGQNPFQMFGMNTPRIWAWGQENKI 142 ++++ +FLS FKLL I LI+ G++PF +FG+ P IW WGQ+NK+ Sbjct 14280109 HRHVASFLSMFKLLVIGLIIIGRDPFALFGVQAPGIWEWGQQNKV 14279975 Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/46 (57%), Positives = 35/46 (76%), Gaps = 2/46 (4%) Frame = -2 Query 55 PVLKFQYC-ISXGYSKVFQEYSRSISQLYPDIRIEGDNYPPKPINK 99 PVL +C IS GY +VF+EY++++ Q YPDIRIEG+NY P PI + Sbjct 14282231 PVL-LSFCSIS*GYKRVFEEYTQALYQRYPDIRIEGENYLPIPIYR 14282097 Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 19/30 (63%), Positives = 28/30 (93%), Gaps = 0/30 (0%) Frame = -2 Query 171 DIPIWSKLQSGYVPNIQELFQILDNHLKMN 200 D+P+WSKL+SG++P++Q+L QILDN +KMN Sbjct 14278895 DVPVWSKLESGHLPSMQQLVQILDNEMKMN 14278806 Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/40 (53%), Positives = 29/40 (73%), Gaps = 0/40 (0%) Frame = -1 Query 141 KIFSCLMAFFISNMLETHFLSTGAFEITLNDIPIWSKLQS 180 +I++C+M FF SNM+E +STGAFEITLN +S + S Sbjct 14279190 QIYACMMVFFFSNMIENQLMSTGAFEITLNGEHFFSSMAS 14279071 > KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, whole genome shotgun sequence Length=26077971 Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/68 (31%), Positives = 35/68 (51%), Gaps = 9/68 (13%) Frame = +3 Query 36 NTGPDINTQRQNKHTFYTGPVLKFQYCISXGYSKVFQEYSRSI---SQLYPDIRI-EGDN 91 TGP Q GP+ FQ+C+S + K +QE ++ + S+ PD+++ +G Sbjct 2629344 RTGP-----HQTPQAELRGPI*GFQHCLSLAFEKAWQEPTQ*VTHGSKQKPDLKLAKGGK 2629508 Query 92 YPPKPINK 99 PP P +K Sbjct 2629509 LPPSPPDK 2629532 Lambda K H a alpha 0.321 0.137 0.421 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22196147526 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40