TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000649_2.0 # Protein # Selenoprotein T1 (SELENOT1) # Zebrafish

Length=178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  74.7    6e-14
  KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  59.3    2e-13
  KQ557210.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  39.7    0.013


> KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold20, 
whole genome shotgun sequence
Length=29933922

 Score = 74.7 bits (182),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 35/45 (78%), Positives = 39/45 (87%), Gaps = 0/45 (0%)
 Frame = -2

Query  40        PLLKFQICVSXGYKRVFEEYTQALYQRYPDIRIEGENYLPLPLYR  84
                 P+L     +S GYKRVFEEYTQALYQRYPDIRIEGENYLP+P+YR
Sbjct  14282231  PVLLSFCSIS*GYKRVFEEYTQALYQRYPDIRIEGENYLPIPIYR  14282097


 Score = 63.5 bits (153),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 33/40 (83%), Gaps = 0/40 (0%)
 Frame = -1

Query  126       KIYACMMVFFFSNMIENQCMSTGAFEITLNDVPVWSKLES  165
                 +IYACMMVFFFSNMIENQ MSTGAFEITLN    +S + S
Sbjct  14279190  QIYACMMVFFFSNMIENQLMSTGAFEITLNGEHFFSSMAS  14279071


 Score = 61.6 bits (148),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 42/45 (93%), Gaps = 0/45 (0%)
 Frame = -3

Query  83        YRHIASFLSMFKllligviilgKDPFALCGMQAPGIWVWSQENKI  127
                 +RH+ASFLSMFKLL+IG+II+G+DPFAL G+QAPGIW W Q+NK+
Sbjct  14280109  HRHVASFLSMFKLLVIGLIIIGRDPFALFGVQAPGIWEWGQQNKV  14279975


 Score = 49.7 bits (117),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 23/23 (100%), Positives = 23/23 (100%), Gaps = 0/23 (0%)
 Frame = -2

Query  156       DVPVWSKLESGHLPSMQQLVQIL  178
                 DVPVWSKLESGHLPSMQQLVQIL
Sbjct  14278895  DVPVWSKLESGHLPSMQQLVQIL  14278827


> KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, 
whole genome shotgun sequence
Length=30170098

 Score = 59.3 bits (142),  Expect(2) = 2e-13, Method: Compositional matrix adjust.
 Identities = 28/72 (39%), Positives = 38/72 (53%), Gaps = 21/72 (29%)
 Frame = +3

Query  105     KDPFALCGMQAPGIWVWSQENK---------------------IYACMMVFFFSNMIENQ  143
               ++PF L G   P +W W+Q NK                     I++C+M FF SNM+E  
Sbjct  708300  QNPFPLLGTDTPAVWTWTQNNKVPNLLCCCRSNTC*RWHSCFQIFSCLMAFFISNMMETH  708479

Query  144     CMSTGAFEITLN  155
                +STGAFE+TLN
Sbjct  708480  FLSTGAFEVTLN  708515


 Score = 37.0 bits (84),  Expect(2) = 2e-13, Method: Compositional matrix adjust.
 Identities = 14/23 (61%), Positives = 22/23 (96%), Gaps = 0/23 (0%)
 Frame = +2

Query  156     DVPVWSKLESGHLPSMQQLVQIL  178
               DVPVWSKL+SG++P++Q++ +IL
Sbjct  708578  DVPVWSKLQSGYVPNIQEMFRIL  708646


 Score = 56.6 bits (135),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 30/38 (79%), Gaps = 0/38 (0%)
 Frame = +1

Query  47      CVSXGYKRVFEEYTQALYQRYPDIRIEGENYLPLPLYR  84
                +S GY +VF+EY+QA+ Q YPDIRI+GENY P PL R
Sbjct  708046  SIS*GYSKVFQEYSQAISQVYPDIRIQGENYPPTPLNR  708159


> KQ557210.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold9, 
whole genome shotgun sequence
Length=32721116

 Score = 39.7 bits (91),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 29/95 (31%), Positives = 50/95 (53%), Gaps = 7/95 (7%)
 Frame = -3

Query  48        VSXGYKRVFEEYTQALYQRYPDIRIEG-ENYLPLPLYRHIASFLSMFKllligviilgKD  106
                 V+    R  +++  +L QR P+ R+ G +N LP+     I+  L + K     V  L ++
Sbjct  29354442  VASSTLRSQDDHEASLAQREPETRVAGRKNELPV-----ISCILHLLKAKEASVS*LYEE  29354278

Query  107       PFALCG-MQAPGIWVWSQENKIYACMMVFFFSNMI  140
                 PF      Q  G++ +SQENK  AC ++ +F ++I
Sbjct  29354277  PFVKIN*QQ*FGLFSFSQENKNEACFILSYFHHVI  29354173



Lambda      K        H        a         alpha
   0.326    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 15112273856


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40