TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000648_2.0 # Protein # Selenoprotein S (SELENOS) # Zebrafish

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557219.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  48.9    9e-11
  KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  31.6    7.4  


> KQ557219.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold18, 
whole genome shotgun sequence
Length=33548221

 Score = 48.9 bits (115),  Expect(2) = 9e-11, Method: Compositional matrix adjust.
 Identities = 24/35 (69%), Positives = 29/35 (83%), Gaps = 0/35 (0%)
 Frame = +1

Query  73       DVGSVVRRQEALEASRRRMQEEQDARAAEFREKQR  107
                DV  V +RQEA+EA+RRRMQ E DA+AA F+EKQR
Sbjct  1372252  DVSLVTKRQEAMEAARRRMQAELDAKAAAFKEKQR  1372356


 Score = 38.1 bits (87),  Expect(2) = 9e-11, Method: Compositional matrix adjust.
 Identities = 18/23 (78%), Positives = 21/23 (91%), Gaps = 0/23 (0%)
 Frame = +2

Query  110      EEEKRRQKIEMWDSMQEGKSYKG  132
                EEEKRRQKIE W+SM++GKS KG
Sbjct  1372433  EEEKRRQKIEEWESMKQGKSSKG  1372501


 Score = 44.3 bits (103),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 20/30 (67%), Positives = 22/30 (73%), Gaps = 0/30 (0%)
 Frame = +2

Query  26       PSVTAFMSEYGWYLLFGCVGVYLLIQHLRK  55
                P+V  F+S YGWYLL   V V LLIQHLRK
Sbjct  1371038  PAVGEFLSLYGWYLLAVTVTVLLLIQHLRK  1371127


 Score = 37.0 bits (84),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 24/26 (92%), Gaps = 1/26 (4%)
 Frame = +3

Query  139      QNTEEA-ASSSSLRPKTEKKPLRSSG  163
                QNTEEA A+++ ++PKT+KKPLRS+G
Sbjct  1372674  QNTEEASAAAAGVKPKTDKKPLRSNG  1372751


> KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, 
whole genome shotgun sequence
Length=28566418

 Score = 31.6 bits (70),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -1

Query  11        NEDVPPQNQDLSFLQPSVTAFMSEYGWYLLFG-CVGVYLLIQH  52
                 ++D+ P     SFL PS T+ M    +YLL G C+ +YLL QH
Sbjct  13460002  SDDMYPSQ---SFLYPSFTSSMGLINFYLLRGTCILLYLLSQH  13459883



Lambda      K        H        a         alpha
   0.312    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 17709694050


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40