TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000642_2.0 # Protein # Selenoprotein P (SELENOP) # Zebrafish Length=327 Score E Sequences producing significant alignments: (Bits) Value KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 99.0 6e-34 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 65.9 5e-14 KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 32.7 7.7 > KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold20, whole genome shotgun sequence Length=29933922 Score = 99.0 bits (245), Expect(2) = 6e-34, Method: Compositional matrix adjust. Identities = 42/71 (59%), Positives = 56/71 (79%), Gaps = 0/71 (0%) Frame = -1 Query 74 LGDLRDKLANGGLTNISFMVVNEQDSQSRAMYWELKRRTAQDIPVYQQSPLQNDVWEILE 133 +G LR KL +T++SF++VNEQ++ SRA+YWELK+R +PVYQQ Q DVWE+L+ Sbjct 6338433 IGHLRTKLRRSNVTDVSFLIVNEQNAVSRALYWELKKRAPTGVPVYQQDANQTDVWEVLD 6338254 Query 134 GDKDDFLVYDR 144 GDKDDFL+YDR Sbjct 6338253 GDKDDFLIYDR 6338221 Score = 68.2 bits (165), Expect(2) = 6e-34, Method: Compositional matrix adjust. Identities = 34/66 (52%), Positives = 47/66 (71%), Gaps = 3/66 (5%) Frame = -3 Query 139 FLVYDRCGYLTFHIVLPFSFLHYPYIEAAIRATYHKNMCNCSLNANFSISESSDSTKNEP 198 FL RCG LTFH+VLP+SF+H PY+EAAIRATY ++CNCS+ ++ + E+ T+ Sbjct 6338152 FLPILRCGLLTFHVVLPYSFMHNPYVEAAIRATYVGDICNCSV-SDPTFGEAHGRTQM-- 6337982 Query 199 AGENNQ 204 GE N+ Sbjct 6337981 GGEKNR 6337964 Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/87 (56%), Positives = 61/87 (70%), Gaps = 9/87 (10%) Frame = -3 Query 7 LLLSAFPALLGA-----SSLFVEKESSGSRICKPAPQWEIDGKTPMKELLGNVVVVALLK 61 L+L ALLG S+L VE + + SRICKPAP+WEI G++P +ELLGNVVVVALLK Sbjct 6339361 LVLCQSAALLGVLWASHSTLLVEGDKNASRICKPAPRWEIKGRSPAQELLGNVVVVALLK 6339182 Query 62 ASXHFCLTQAAR----LGDLRDKLANG 84 AS HFCL QA+R + ++R KL G Sbjct 6339181 AS*HFCLVQASR*VRKVANVRIKLEGG 6339101 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 65.9 bits (159), Expect(2) = 5e-14, Method: Compositional matrix adjust. Identities = 33/85 (39%), Positives = 51/85 (60%), Gaps = 4/85 (5%) Frame = -2 Query 60 LKASXHFCLTQAARLGDLRDKLANGGLTNISFMVVNEQDSQSRAMYWELKRRTAQDIPVY 119 L++ HF R+ LR KL GL ++ +MV+N Q Q++ ++ L +R + I +Y Sbjct 22256508 LRSVVHF----PHRIDGLRQKLEAQGLNDVVYMVINHQGEQAQRLHPLLAQRLSDKISLY 22256341 Query 120 QQSPLQNDVWEILEGDKDDFLVYDR 144 +Q Q DVW+ L G KDDF++YDR Sbjct 22256340 KQGEQQPDVWQTLNGKKDDFIIYDR 22256266 Score = 33.9 bits (76), Expect(2) = 5e-14, Method: Compositional matrix adjust. Identities = 17/40 (43%), Positives = 24/40 (60%), Gaps = 0/40 (0%) Frame = -1 Query 139 FLVYDRCGYLTFHIVLPFSFLHYPYIEAAIRATYHKNMCN 178 +L RCG LT HI LP+S + + +IE+AI+ Y C Sbjct 22256173 YLCNLRCGRLTDHISLPYSVIGHGHIESAIKEAYCNRKCG 22256054 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 0/44 (0%) Frame = -2 Query 33 CKPAPQWEIDGKTPMKELLGNVVVVALLKASXHFCLTQAARLGD 76 C+P W I PMK G V VVALL+A+ FCL QA+R G Sbjct 22257360 CQPPSTWMIGEVEPMKGTAGQVTVVALLQAT*LFCLVQASRYGS 22257229 > KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold24, whole genome shotgun sequence Length=55650406 Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 23/35 (66%), Gaps = 0/35 (0%) Frame = -3 Query 113 AQDIPVYQQSPLQNDVWEILEGDKDDFLVYDRCGY 147 A DI + + LQN+V EI++ +K F+ ++ CG+ Sbjct 4722755 ALDIRIIKSQKLQNEVDEIIKEEKKSFMSHNFCGH 4722651 Lambda K H a alpha 0.319 0.133 0.418 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 48406461195 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40