TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000643_2.0 # Protein # Selenoprotein P (SELENOP) # Zebrafish Length=367 Score E Sequences producing significant alignments: (Bits) Value KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 57.4 4e-18 KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 44.7 6e-10 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 57.4 bits (137), Expect(2) = 4e-18, Method: Compositional matrix adjust. Identities = 25/40 (63%), Positives = 31/40 (78%), Gaps = 0/40 (0%) Frame = -1 Query 138 RCGRLTYHLSLPYTILIHPHVEEAIKHTYCDRICGECSLE 177 RCGRLT H+SLPY+++ H H+E AIK YC+R CG CS E Sbjct 22256158 RCGRLTDHISLPYSVIGHGHIESAIKEAYCNRKCGACSHE 22256039 Score = 56.6 bits (135), Expect(2) = 4e-18, Method: Compositional matrix adjust. Identities = 35/73 (48%), Positives = 52/73 (71%), Gaps = 1/73 (1%) Frame = -2 Query 68 KLNDLLLKLEKQGYPNIAYMVVNNREERSqrlhhllqerllN-ITLYAQDLSQPDAWQAV 126 +++ L KLE QG ++ YMV+N++ E++QRLH LL +RL + I+LY Q QPD WQ + Sbjct 22256481 RIDGLRQKLEAQGLNDVVYMVINHQGEQAQRLHPLLAQRLSDKISLYKQGEQQPDVWQTL 22256302 Query 127 NAEKDDILVYDRC 139 N +KDD ++YDR Sbjct 22256301 NGKKDDFIIYDRF 22256263 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 0/45 (0%) Frame = -2 Query 27 RCKLPPEWKVGDVEPMKNALGQVTVVAYLQASXLFCLEQASKLND 71 RC+ P W +G+VEPMK GQVTVVA LQA+ LFCL QAS+ Sbjct 22257363 RCQPPSTWMIGEVEPMKGTAGQVTVVALLQAT*LFCLVQASRYGS 22257229 Score = 33.5 bits (75), Expect = 5.0, Method: Compositional matrix adjust. Identities = 27/62 (44%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Frame = -3 Query 285 SPVASXCXHXRQLFGGEGNGRVAGLXHCDEPLPASXPXQGL-KEQDNHIKETXQXRPAPP 343 +P AS C H R++FG G+ + GL HC+ L AS QGL E ++ET Q R P Sbjct 22255490 APKAS*C*H*RRMFGEAGSEQSLGL*HCEGGLLAS*Q*QGLTSEAAADVRET*Q*R-MPS 22255314 Query 344 AE 345 AE Sbjct 22255313 AE 22255308 > KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold20, whole genome shotgun sequence Length=29933922 Score = 44.7 bits (104), Expect(2) = 6e-10, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (3%) Frame = -3 Query 138 RCGRLTYHLSLPYTILIHPHVEEAIKHTYCDRICGECSLE 177 RCG LT+H+ LPY+ + +P+VE AI+ TY IC CS+ Sbjct 6338137 RCGLLTFHVVLPYSFMHNPYVEAAIRATYVGDIC-NCSVS 6338021 Score = 41.6 bits (96), Expect(2) = 6e-10, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 42/68 (62%), Gaps = 1/68 (1%) Frame = -1 Query 72 LLLKLEKQGYPNIAYMVVNNREERSqrlhhllqerl-lNITLYAQDLSQPDAWQAVNAEK 130 L KL + ++++++VN + S+ L+ L++R + +Y QD +Q D W+ ++ +K Sbjct 6338424 LRTKLRRSNVTDVSFLIVNEQNAVSRALYWELKKRAPTGVPVYQQDANQTDVWEVLDGDK 6338245 Query 131 DDILVYDR 138 DD L+YDR Sbjct 6338244 DDFLIYDR 6338221 Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Frame = -3 Query 28 CKLPPEWKVGDVEPMKNALGQVTVVAYLQASXLFCLEQAS----KLNDLLLKLE 77 CK P W++ P + LG V VVA L+AS FCL QAS K+ ++ +KLE Sbjct 6339268 CKPAPRWEIKGRSPAQELLGNVVVVALLKAS*HFCLVQASR*VRKVANVRIKLE 6339107 Lambda K H a alpha 0.313 0.131 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 57615489176 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40