TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000641_2.0 # Protein # Selenoprotein O2 (SELENOO2) # Zebrafish Length=671 Score E Sequences producing significant alignments: (Bits) Value KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 264 8e-94 KQ557209.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 172 8e-63 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 264 bits (675), Expect(2) = 8e-94, Method: Compositional matrix adjust. Identities = 159/284 (56%), Positives = 181/284 (64%), Gaps = 59/284 (21%) Frame = +3 Query 5 LISLRMDQ-----SLTPLERLKFNNVALKALPVDSSLEPGSRTVKAACFSLVKPQALIKP 59 L ++RMD+ + L+RL F+NVALK LP+D S EPG R VK ACFS V P+ L P Sbjct 23040843 LCTVRMDEMGLAVGRSALDRLDFDNVALKKLPLDPSDEPGVRMVKGACFSRVNPEPLSNP 23041022 Query 60 TIValsgpalallglKVEDVLQDPHAAEYLSGSRLIQGSEPAAHCYCGHQFGQFAGQLGD 119 VA+SG ALALLGL E+V+ DP EYLSGS+++ GSEPAAHCYCGHQFGQFAGQLGD Sbjct 23041023 RFVAVSGEALALLGLAGEEVMNDPLGPEYLSGSKVMPGSEPAAHCYCGHQFGQFAGQLGD 23041202 Query 120 GAVCYLGEVEVEVGAEQTTDPNRTSPCGRWEIQVKGAGLTPYS----------------- 162 GA CYLGEV V G Q + R +P GRWEIQVKGAGLTPYS Sbjct 23041203 GAACYLGEVTVPPG--QNPELLRENPSGRWEIQVKGAGLTPYSR*QD*QSSSSSFLWLYF 23041376 Query 163 -----------------------------------RLSDGRKVLRSSIREFLCSEAMFAL 187 R +DGRKVLRSS+REFLCSEAMF L Sbjct 23041377 LSERKVIEGIKILYCFPNCFVFFYHPTLT*STSPHRKADGRKVLRSSVREFLCSEAMFFL 23041556 Query 188 GIPTTRAGSLVTSDLYVQRDEFYSGNPKPERCSVVLRIAPTFIR 231 GIPTTRAGS+VTSD V RD +YSGNP E+CSVVLRIAPTF+R Sbjct 23041557 GIPTTRAGSVVTSDSKVIRDIYYSGNPCYEKCSVVLRIAPTFLR 23041688 Score = 103 bits (258), Expect(2) = 8e-94, Method: Compositional matrix adjust. Identities = 49/63 (78%), Positives = 52/63 (83%), Gaps = 0/63 (0%) Frame = +2 Query 231 RFGSFEIFHPLDDFTGRQGPSVGRPDIRAGLLDYVIETFYPEIQRGHLDRKERNAAFFRE 290 RFGSFEIF P D+FTGRQGPS GR +IR +LDYVIE FYPEIQRGH DR ERN AFFRE Sbjct 23041772 RFGSFEIFKPADEFTGRQGPSYGREEIRGQMLDYVIEMFYPEIQRGHPDRLERNVAFFRE 23041951 Query 291 VTV 293 V V Sbjct 23041952 VRV 23041960 Score = 130 bits (328), Expect(2) = 2e-40, Method: Compositional matrix adjust. Identities = 57/99 (58%), Positives = 74/99 (75%), Gaps = 0/99 (0%) Frame = +3 Query 329 FGFMDRFDPEFVCNASDKKGRYTYEAQPYVCRWNLARLAEALGAEIQSIKAGVILDEFMS 388 F RFDP+F+CNASD GRY+Y+AQP +CRWNL +LAEAL E+ +A + DE++ Sbjct 23043216 FHIHFRFDPDFICNASDNSGRYSYKAQPAICRWNLVKLAEALAPELPPDRAKAVTDEYLD 23043395 Query 389 LYEDFYLGNMRKKLGLLRKQEPEDGELVADMLKTMHITG 427 + FYL NMRKKLGLLRK+EPED L+ ++L+TMH TG Sbjct 23043396 HFNRFYLENMRKKLGLLRKEEPEDEILITELLRTMHDTG 23043512 Score = 59.3 bits (142), Expect(2) = 2e-40, Method: Compositional matrix adjust. Identities = 31/56 (55%), Positives = 36/56 (64%), Gaps = 2/56 (4%) Frame = +1 Query 427 GADFTNTFRLLSDISSPVGDPAEKDN--TDSVVELIVDQCALLEELKVANHPTMQP 480 GADFTNTFR L+ IS P E+D EL+++QCA LEELK AN PTM P Sbjct 23043586 GADFTNTFRNLAQISCPSEGETERDEEIVKKASELLLEQCASLEELKSANTPTMDP 23043753 Score = 75.1 bits (183), Expect(2) = 3e-22, Method: Compositional matrix adjust. Identities = 37/56 (66%), Positives = 43/56 (77%), Gaps = 0/56 (0%) Frame = +1 Query 542 YRKRLAFECNQASDPASVEKERVRFMNSTNPAVVLRNYIAQNAIDAAEKGDFSEVQ 597 +RKRLA E SD V++ER R M+ TNP VVLRNYIAQNAI+AAE GDFSEV+ Sbjct 23045950 HRKRLARELEGQSDIQVVQEERARVMDGTNPRVVLRNYIAQNAIEAAENGDFSEVR 23046117 Score = 53.9 bits (128), Expect(2) = 3e-22, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 43/77 (56%), Gaps = 2/77 (3%) Frame = +3 Query 595 EVQRVLRVLENPYSVSPDLECPVWSAGKGSGQADGISIKGQEVMENTQRKTAAETHHISY 654 +VQRVL+VLE P+S P LE P W G G +G+E + T ++ + + Y Sbjct 23046198 QVQRVLKVLEKPFSSQPGLELPTW-VGSHRRTEQGERDEGEEPQQGTS-SSSTDMSPVPY 23046371 Query 655 NSKPSEWAKAISVTXSS 671 +SKP WA+ I VT SS Sbjct 23046372 DSKPPAWARQICVT*SS 23046422 Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 36/44 (82%), Positives = 40/44 (91%), Gaps = 0/44 (0%) Frame = +3 Query 291 VTVRTAKLVALWQSVGFCHGVLNTDNMSILGLTIDYGPFGFMDR 334 V RTA+LVA WQ VGFCHGVLNTDNMS+LGLT+DYGP+GFMDR Sbjct 23042271 VMSRTARLVAQWQCVGFCHGVLNTDNMSVLGLTLDYGPYGFMDR 23042402 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 44/63 (70%), Gaps = 0/63 (0%) Frame = +2 Query 481 GELEMILSMAETNPEMFNMVANQPEVTKQLEKIGRLRELLMISEAELKVKQREHWQRWVK 540 EL M+LSMA++NP +F M++++ + +QL+++ +L+ LL S+ EL+ +Q + W W+ Sbjct 23045525 SELSMLLSMAQSNPALFEMISDRATIARQLDRMSKLKVLLETSQDELRARQAQEWISWIA 23045704 Query 541 QYR 543 YR Sbjct 23045705 LYR 23045713 > KQ557209.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold8, whole genome shotgun sequence Length=19682451 Score = 172 bits (435), Expect(2) = 8e-63, Method: Compositional matrix adjust. Identities = 92/162 (57%), Positives = 106/162 (65%), Gaps = 33/162 (20%) Frame = +1 Query 163 RLSDGRKVLRSSIREFLCSEAMFALGIPTTRAGSLVTSDLYVQRDEFYSGNPKPERCSVV 222 R DGRKVLRSS+REFLCSEAMFALGIPTTRA SLVTSDL++ RD +G ERCSVV Sbjct 15891115 RDGDGRKVLRSSVREFLCSEAMFALGIPTTRAASLVTSDLHIGRDPLNNGERILERCSVV 15891294 Query 223 LRIAPTFI---------------------------------RFGSFEIFHPLDDFTGRQG 249 +R+AP+FI RFGSFEIF D+F+G QG Sbjct 15891295 MRLAPSFIRFSDFLCR*QAESYIHKKWT*ILSVSLLCL*TNRFGSFEIFLGRDEFSGLQG 15891474 Query 250 PSVGRPDIRAGLLDYVIETFYPEIQRGHLDRKERNAAFFREV 291 PS GR D RA LLDYVIE+FYP IQ+ H +R+ERN +FFREV Sbjct 15891475 PSAGRHDNRAQLLDYVIESFYPHIQQAHNNRRERNLSFFREV 15891600 Score = 93.2 bits (230), Expect(2) = 8e-63, Method: Compositional matrix adjust. Identities = 40/49 (82%), Positives = 44/49 (90%), Gaps = 0/49 (0%) Frame = +2 Query 287 FFREVTVRTAKLVALWQSVGFCHGVLNTDNMSILGLTIDYGPFGFMDRF 335 F +V +RTAKLVA WQ VGFCHGVLNTDNMSILGLT+DYGPFGFMDR+ Sbjct 15891656 FIHQVMMRTAKLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDRY 15891802 Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 97/148 (66%), Positives = 107/148 (72%), Gaps = 14/148 (9%) Frame = +1 Query 17 LERLKFNNVALKALPVDSSLEPGSRTVKAACFSLVKP-QALIKPTIValsgpalallglK 75 LERL FNN ALK LP+D S EPGSRTV ACFS V L++P IVALS P+ +LLGL Sbjct 15889459 LERLTFNNTALKRLPIDVSAEPGSRTVPGACFSRVGSLHPLLRPRIVALSQPSFSLLGLS 15889638 Query 76 VEDVLQDPHAAEYLSGSRLIQGSEPAAHCYCGHQFGQFAGQLGDGAVCYLGEVEVEVGAE 135 ++VL DP A EYLSGSRL+ GSEPAAHCYCGHQFG FAGQLGDGAV YLGEVE + Sbjct 15889639 AQEVLDDPLAPEYLSGSRLLAGSEPAAHCYCGHQFGLFAGQLGDGAVMYLGEVESDTQ-- 15889812 Query 136 QTTDPNRTSPCGRWEIQVKGAGLTPYSR 163 G WEIQVKGAG+TPYSR Sbjct 15889813 -----------GHWEIQVKGAGVTPYSR 15889863 Score = 162 bits (410), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 87/169 (51%), Positives = 110/169 (65%), Gaps = 29/169 (17%) Frame = +1 Query 333 DRFDPEFVCNASDKKGRYTYEAQPYVCRWNLARLAEALGAEIQSIKAGVILDEFMSLYED 392 DRFDP+FVCNASDK+ RY+Y+AQP VCRWNLARLAEALG+E+++ AG +LD+FM YE Sbjct 15892210 DRFDPDFVCNASDKRRRYSYQAQPSVCRWNLARLAEALGSELRAADAGAVLDDFMPTYEA 15892389 Query 393 FYLGNMRKKLGLLRKQEPEDGELVADMLKTMHITGAD-------------FTNTFRL--- 436 FYL MRKKLGL+RK+E ED E+V+D+L+ MH TG F N L Sbjct 15892390 FYLCGMRKKLGLVRKEEAEDREVVSDLLRVMHNTGKKYKKLL*I*FYNGLFGNNCTLNWG 15892569 Query 437 ------LSDISSPVGDPAEKDNTDSVVELIVDQCALLEELKVANHPTMQ 479 SP +P ++V+LI+ QCA +EELKVAN PTM+ Sbjct 15892570 FLRRG*FHQHFSP-SEPC------TLVDLILKQCASIEELKVANKPTME 15892695 Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 38/62 (61%), Positives = 46/62 (74%), Gaps = 0/62 (0%) Frame = +2 Query 482 ELEMILSMAETNPEMFNMVANQPEVTKQLEKIGRLRELLMISEAELKVKQREHWQRWVKQ 541 EL MILSMA TNP MF MVA++P+V +QLE +GRL+ELL + ELK KQR W RW + Sbjct 15894194 ELAMILSMAHTNPVMFGMVADRPDVAQQLELMGRLKELLETDQEELKEKQRGDWIRWTCR 15894373 Query 542 YR 543 YR Sbjct 15894374 YR 15894379 Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/79 (57%), Positives = 52/79 (66%), Gaps = 10/79 (13%) Frame = +1 Query 543 RKRLAFECNQASDPASVEKERVRFMNSTNPAVVLRNYIAQNAIDAAEKGDFSEVQRVLRV 602 R+RLA E + SD V+KER+R M S+NP VVLRNYIAQNAI AA+KGDFSEV+ Sbjct 15894553 RRRLAREFDGTSDLHLVKKERLRVMKSSNPRVVLRNYIAQNAIQAADKGDFSEVR---PK 15894723 Query 603 LENPYSVSPDLECPVWSAG 621 LENP S P W G Sbjct 15894724 LENPKS-------PKW*PG 15894759 Lambda K H a alpha 0.318 0.134 0.395 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 127981865968 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40