TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000640_2.0 # Protein # Selenoprotein O1 (SELENOO1) # Zebrafish Length=692 Score E Sequences producing significant alignments: (Bits) Value KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 358 2e-121 KQ557209.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 153 4e-59 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 34.3 7.0 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 358 bits (920), Expect(2) = 2e-121, Method: Compositional matrix adjust. Identities = 193/305 (63%), Positives = 217/305 (71%), Gaps = 52/305 (17%) Frame = +3 Query 1 MASVGSRLTRFYISRPGVIARRFLAHAGMDDMGVslsrsslerleFDNVALKKLPLDPST 60 MA +G RL + P V R L MD+MG+++ RS+L+RL+FDNVALKKLPLDPS Sbjct 23040774 MAYLGPRLGVSRLFLPRVTVFRVLCTVRMDEMGLAVGRSALDRLDFDNVALKKLPLDPSD 23040953 Query 61 EPGVRQVRGSCFSRVQPTPLKNPEFVAVSAPALALLGLDAEEVLKDPLGPEYLSGSKVMP 120 EPGVR V+G+CFSRV P PL NP FVAVS ALALLGL EEV+ DPLGPEYLSGSKVMP Sbjct 23040954 EPGVRMVKGACFSRVNPEPLSNPRFVAVSGEALALLGLAGEEVMNDPLGPEYLSGSKVMP 23041133 Query 121 GSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKAPAGQSPELLRENPTGRWEIQVKGAGL 180 GSEPAAHCYCGHQFGQFAGQLGDGAACYLGEV P GQ+PELLRENP+GRWEIQVKGAGL Sbjct 23041134 GSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVTVPPGQNPELLRENPSGRWEIQVKGAGL 23041313 Query 181 TPYS----------------------------------------------------RQAD 188 TPYS R+AD Sbjct 23041314 TPYSR*QD*QSSSSSFLWLYFLSERKVIEGIKILYCFPNCFVFFYHPTLT*STSPHRKAD 23041493 Query 189 GRKVLRSSIREFLCSEAVFALGVPTTRAGSVVTSDSRVMRDIFYDGNPRMERCSVVLRIA 248 GRKVLRSS+REFLCSEA+F LG+PTTRAGSVVTSDS+V+RDI+Y GNP E+CSVVLRIA Sbjct 23041494 GRKVLRSSVREFLCSEAMFFLGIPTTRAGSVVTSDSKVIRDIYYSGNPCYEKCSVVLRIA 23041673 Query 249 PSFIR 253 P+F+R Sbjct 23041674 PTFLR 23041688 Score = 102 bits (253), Expect(2) = 2e-121, Method: Compositional matrix adjust. Identities = 48/63 (76%), Positives = 53/63 (84%), Gaps = 0/63 (0%) Frame = +2 Query 253 RFGSFEIFKRADEFTGRQGPSYGHDELRTQMLEYVIENFYPEIHRNYPDLTERNTAFFKE 312 RFGSFEIFK ADEFTGRQGPSYG +E+R QML+YVIE FYPEI R +PD ERN AFF+E Sbjct 23041772 RFGSFEIFKPADEFTGRQGPSYGREEIRGQMLDYVIEMFYPEIQRGHPDRLERNVAFFRE 23041951 Query 313 VTV 315 V V Sbjct 23041952 VRV 23041960 Score = 169 bits (427), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 78/99 (79%), Positives = 87/99 (88%), Gaps = 0/99 (0%) Frame = +3 Query 351 FGFMDRFDPDFICNASDNSGRYSYQAQPAICRWNLARLAEALEPDLPPDRAEQVLDEYLP 410 F RFDPDFICNASDNSGRYSY+AQPAICRWNL +LAEAL P+LPPDRA+ V DEYL Sbjct 23043216 FHIHFRFDPDFICNASDNSGRYSYKAQPAICRWNLVKLAEALAPELPPDRAKAVTDEYLD 23043395 Query 411 LYNDFYLSNMRKKLGLLRKEEPEDEMLITELMQTMHNTG 449 +N FYL NMRKKLGLLRKEEPEDE+LITEL++TMH+TG Sbjct 23043396 HFNRFYLENMRKKLGLLRKEEPEDEILITELLRTMHDTG 23043512 Score = 81.6 bits (200), Expect(2) = 4e-32, Method: Compositional matrix adjust. Identities = 45/75 (60%), Positives = 50/75 (67%), Gaps = 1/75 (1%) Frame = +3 Query 619 EVQRVLKVLEKPFSVQEGLEQPGWMGRGGAAIPGERDETEE-EGSNSSGAGARGLVPYDS 677 +VQRVLKVLEKPFS Q GLE P W+G GERDE EE + SS + VPYDS Sbjct 23046198 QVQRVLKVLEKPFSSQPGLELPTWVGSHRRTEQGERDEGEEPQQGTSSSSTDMSPVPYDS 23046377 Query 678 KPPVWANEICVTXSS 692 KPP WA +ICVT SS Sbjct 23046378 KPPAWARQICVT*SS 23046422 Score = 80.5 bits (197), Expect(2) = 4e-32, Method: Compositional matrix adjust. Identities = 39/56 (70%), Positives = 45/56 (80%), Gaps = 0/56 (0%) Frame = +1 Query 566 YRQRLARECESGVDVKDVQTERVRVMNNNNPHVVLRNYIAQNAIAAAENGDFSEVQ 621 +R+RLARE E D++ VQ ER RVM+ NP VVLRNYIAQNAI AAENGDFSEV+ Sbjct 23045950 HRKRLARELEGQSDIQVVQEERARVMDGTNPRVVLRNYIAQNAIEAAENGDFSEVR 23046117 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 40/44 (91%), Positives = 42/44 (95%), Gaps = 0/44 (0%) Frame = +3 Query 313 VTVRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDR 356 V RTARLVAQWQCVGFCHGVLNTDNMS+LGLTLDYGP+GFMDR Sbjct 23042271 VMSRTARLVAQWQCVGFCHGVLNTDNMSVLGLTLDYGPYGFMDR 23042402 Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 36/62 (58%), Positives = 52/62 (84%), Gaps = 0/62 (0%) Frame = +2 Query 506 ELAMLVSMAQSNPALFQMISDRGTVSRQLERLSRLKELMDTTEEQLRVKHTEHWSDWIQK 565 EL+ML+SMAQSNPALF+MISDR T++RQL+R+S+LK L++T++++LR + + W WI Sbjct 23045528 ELSMLLSMAQSNPALFEMISDRATIARQLDRMSKLKVLLETSQDELRARQAQEWISWIAL 23045707 Query 566 YR 567 YR Sbjct 23045708 YR 23045713 Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/83 (54%), Positives = 60/83 (72%), Gaps = 0/83 (0%) Frame = +1 Query 423 KLGLLRKEEPEDEMLITELMQTMHNTGADFTNTFRSLSQISCPTQEEAEDESETIKQATE 482 ++GL R ++M I L+ GADFTNTFR+L+QISCP++ E E + E +K+A+E Sbjct 23043508 QVGLQRGMFALNQMSID*LIFHFFPAGADFTNTFRNLAQISCPSEGETERDEEIVKKASE 23043687 Query 483 LLLHQSASLEELKAANRPSMDPR 505 LLL Q ASLEELK+AN P+MDPR Sbjct 23043688 LLLEQCASLEELKSANTPTMDPR 23043756 > KQ557209.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold8, whole genome shotgun sequence Length=19682451 Score = 153 bits (386), Expect(2) = 4e-59, Method: Compositional matrix adjust. Identities = 82/162 (51%), Positives = 101/162 (62%), Gaps = 33/162 (20%) Frame = +1 Query 185 RQADGRKVLRSSIREFLCSEAVFALGVPTTRAGSVVTSDSRVMRDIFYDGNPRMERCSVV 244 R DGRKVLRSS+REFLCSEA+FALG+PTTRA S+VTSD + RD +G +ERCSVV Sbjct 15891115 RDGDGRKVLRSSVREFLCSEAMFALGIPTTRAASLVTSDLHIGRDPLNNGERILERCSVV 15891294 Query 245 LRIAPSFI---------------------------------RFGSFEIFKRADEFTGRQG 271 +R+APSFI RFGSFEIF DEF+G QG Sbjct 15891295 MRLAPSFIRFSDFLCR*QAESYIHKKWT*ILSVSLLCL*TNRFGSFEIFLGRDEFSGLQG 15891474 Query 272 PSYGHDELRTQMLEYVIENFYPEIHRNYPDLTERNTAFFKEV 313 PS G + R Q+L+YVIE+FYP I + + + ERN +FF+EV Sbjct 15891475 PSAGRHDNRAQLLDYVIESFYPHIQQAHNNRRERNLSFFREV 15891600 Score = 99.4 bits (246), Expect(2) = 4e-59, Method: Compositional matrix adjust. Identities = 42/49 (86%), Positives = 46/49 (94%), Gaps = 0/49 (0%) Frame = +2 Query 309 FFKEVTVRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDRF 357 F +V +RTA+LVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDR+ Sbjct 15891656 FIHQVMMRTAKLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDRY 15891802 Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 89/141 (63%), Positives = 104/141 (74%), Gaps = 12/141 (9%) Frame = +1 Query 46 FDNVALKKLPLDPSTEPGVRQVRGSCFSRVQPT-PLKNPEFVAVSAPALALLGLDAEEVL 104 F+N ALK+LP+D S EPG R V G+CFSRV PL P VA+S P+ +LLGL A+EVL Sbjct 15889474 FNNTALKRLPIDVSAEPGSRTVPGACFSRVGSLHPLLRPRIVALSQPSFSLLGLSAQEVL 15889653 Query 105 KDPLGPEYLSGSKVMPGSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKAPAGQSPELLR 164 DPL PEYLSGS+++ GSEPAAHCYCGHQFG FAGQLGDGA YLGEV++ Sbjct 15889654 DDPLAPEYLSGSRLLAGSEPAAHCYCGHQFGLFAGQLGDGAVMYLGEVES---------- 15889803 Query 165 ENPTGRWEIQVKGAGLTPYSR 185 + G WEIQVKGAG+TPYSR Sbjct 15889804 -DTQGHWEIQVKGAGVTPYSR 15889863 Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 80/167 (48%), Positives = 105/167 (63%), Gaps = 19/167 (11%) Frame = +1 Query 355 DRFDPDFICNASDNSGRYSYQAQPAICRWNLARLAEALEPDLPPDRAEQVLDEYLPLYND 414 DRFDPDF+CNASD RYSYQAQP++CRWNLARLAEAL +L A VLD+++P Y Sbjct 15892210 DRFDPDFVCNASDKRRRYSYQAQPSVCRWNLARLAEALGSELRAADAGAVLDDFMPTYEA 15892389 Query 415 FYLSNMRKKLGLLRKEEPEDEMLITELMQTMHNTGADFTNT-----FRSLSQISCPT--- 466 FYL MRKKLGL+RKEE ED ++++L++ MHNTG + + L +C Sbjct 15892390 FYLCGMRKKLGLVRKEEAEDREVVSDLLRVMHNTGKKYKKLL*I*FYNGLFGNNCTLNWG 15892569 Query 467 --------QEEAEDESETIKQATELLLHQSASLEELKAANRPSMDPR 505 Q + E T+ +L+L Q AS+EELK AN+P+M+ R Sbjct 15892570 FLRRG*FHQHFSPSEPCTL---VDLILKQCASIEELKVANKPTMEDR 15892701 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/55 (64%), Positives = 44/55 (80%), Gaps = 0/55 (0%) Frame = +1 Query 567 RQRLARECESGVDVKDVQTERVRVMNNNNPHVVLRNYIAQNAIAAAENGDFSEVQ 621 R+RLARE + D+ V+ ER+RVM ++NP VVLRNYIAQNAI AA+ GDFSEV+ Sbjct 15894553 RRRLAREFDGTSDLHLVKKERLRVMKSSNPRVVLRNYIAQNAIQAADKGDFSEVR 15894717 Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 45/62 (73%), Gaps = 0/62 (0%) Frame = +2 Query 506 ELAMLVSMAQSNPALFQMISDRGTVSRQLERLSRLKELMDTTEEQLRVKHTEHWSDWIQK 565 ELAM++SMA +NP +F M++DR V++QLE + RLKEL++T +E+L+ K W W + Sbjct 15894194 ELAMILSMAHTNPVMFGMVADRPDVAQQLELMGRLKELLETDQEELKEKQRGDWIRWTCR 15894373 Query 566 YR 567 YR Sbjct 15894374 YR 15894379 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 20/74 (27%) Frame = +1 Query 619 EVQRVLKVLEKPFSVQEGLEQPGWMGRGGAAIPGERDETEEEGSNSSGAGARGLVPYDSK 678 +V R+LKVLE P++ E L Q G DETE+ ++ YD+K Sbjct 15894997 QVNRILKVLEDPYTDPEPLCQQD----------GTCDETEKLFADG----------YDAK 15895116 Query 679 PPVWANEICVTXSS 692 PP WA +IC+T S+ Sbjct 15895117 PPAWAQKICIT*ST 15895158 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 34.3 bits (77), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/44 (39%), Positives = 21/44 (48%), Gaps = 0/44 (0%) Frame = +3 Query 631 FSVQEGLEQPGWMGRGGAAIPGERDETEEEGSNSSGAGARGLVP 674 FS Q EQPG R A P + +ETE + N A L+P Sbjct 31113099 FSAQSRDEQPGQRARKHRAAPNQENETENQNRNRRVAAQFNLIP 31113230 Lambda K H a alpha 0.318 0.134 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 132940572952 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40