TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000639_2.0 # Protein # Selenoprotein N (SELENON) # Zebrafish Length=557 Score E Sequences producing significant alignments: (Bits) Value KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 168 1e-60 > KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, whole genome shotgun sequence Length=26077971 Score = 168 bits (426), Expect(2) = 1e-60, Method: Compositional matrix adjust. Identities = 84/145 (58%), Positives = 99/145 (68%), Gaps = 23/145 (16%) Frame = -3 Query 101 LTGVAPPPEYEEEIPHDPNGETLTLHAKMQPLLLESMTKSKDGFLGV------------- 147 L G+ P + EE++ DPNGETL L A M+PLLL+SMTKS+D FLGV Sbjct 3132511 LAGITAPVDLEEDVIDDPNGETLVLEASMKPLLLDSMTKSRDRFLGVKTIK*KTSKRC*N 3132332 Query 148 ----------SHSSLSGLRSWKRPAISSSTFYASQFKVFLPPSGKSAVGDTWWIIPSELN 197 SHSSLSGLRSW PA+ SS+F A F+VFLPP GK+ GD WW+IPSELN Sbjct 3132331 VRSGIVFVQLSHSSLSGLRSWTHPAVPSSSFPAGHFRVFLPPKGKTEPGDAWWVIPSELN 3132152 Query 198 IFTGYLPNNRFHPPTPRGKEVLIHS 222 IFTGYLPNNR+HPPTP+GKEV+ S Sbjct 3132151 IFTGYLPNNRYHPPTPKGKEVIQRS 3132077 Score = 88.6 bits (218), Expect(2) = 1e-60, Method: Compositional matrix adjust. Identities = 39/43 (91%), Positives = 42/43 (98%), Gaps = 0/43 (0%) Frame = -2 Query 217 EVLIHSLLSMFHPRPFVKSRFAPQGAVACIRATSDFYYDIVFR 259 +VLIHSLLSMFHPRPF+KSRFAPQG VACIRA+SDFYYDIVFR Sbjct 3132017 QVLIHSLLSMFHPRPFIKSRFAPQGTVACIRASSDFYYDIVFR 3131889 Score = 92.4 bits (228), Expect(2) = 2e-32, Method: Compositional matrix adjust. Identities = 45/65 (69%), Positives = 51/65 (78%), Gaps = 0/65 (0%) Frame = -2 Query 332 QMELGAEGPSTPSVIYDEQGNMIDSRGEGGEPIQFVFEEIVWSEELKREEASRRLEVTMY 391 Q+EL + GPSTPSVI DE GN+IDSR GEPI+FVFEEI W+ + EEAS RLEVT Y Sbjct 3128834 QLELRSAGPSTPSVIVDEDGNVIDSRDGRGEPIRFVFEEIRWTSAINEEEASHRLEVTFY 3128655 Query 392 PFKKV 396 PFKKV Sbjct 3128654 PFKKV 3128640 Score = 70.5 bits (171), Expect(2) = 2e-32, Method: Compositional matrix adjust. Identities = 32/38 (84%), Positives = 35/38 (92%), Gaps = 0/38 (0%) Frame = -3 Query 395 KVPYLPFSEAFSRASAEKKLVHSILLWGALDDQSCXGS 432 +VPYLPFSEAF RA +EKKLVHSILLWGALDDQSC G+ Sbjct 3128569 QVPYLPFSEAFERAESEKKLVHSILLWGALDDQSC*GN 3128456 Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 60/102 (59%), Positives = 69/102 (68%), Gaps = 28/102 (27%) Frame = -3 Query 431 GSGRTLRETVLESSPVLALLNQSFISSWSLVKELEDL----------------------- 467 GSGRTLRETVLESSPVLALLNQSFISSWSLVKELE++ Sbjct 3127747 GSGRTLRETVLESSPVLALLNQSFISSWSLVKELENMQVSAQCSGEPVKTLTRCAATQLL 3127568 Query 468 -----QGDVKNLELSEKARLHLEKYTFPVQMMVVLPNGTVVH 504 Q D +N LSEKA+LHLEKY+FPV+M+V LPNGT+V+ Sbjct 3127567 SLFLFQADKQNPALSEKAQLHLEKYSFPVEMLVALPNGTIVN 3127442 Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 43/53 (81%), Positives = 46/53 (87%), Gaps = 0/53 (0%) Frame = -2 Query 503 VHHINANNFLDQTSMKPEDEGPGLSFSAGFEDPSTSTYIRFLQEGLEKAKPYL 555 VHHINAN FLDQT+MKPEDEG SFS GFEDPSTSTYI FL+EGLEKAK Y+ Sbjct 3127016 VHHINANYFLDQTAMKPEDEGATFSFSGGFEDPSTSTYISFLKEGLEKAKDYI 3126858 Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 38/60 (63%), Positives = 49/60 (82%), Gaps = 0/60 (0%) Frame = -1 Query 246 IRATSDFYYDIVFRIHAEFQLNDVPDFPFWFTPGQFAGHIILSKDASHVRDFHIYVPNDK 305 + +SD + RIHAEFQLNDVP+FPFWFTPGQF G+I++SKDASHVR F +YVP+++ Sbjct 3130671 VMKSSDSHCVHTCRIHAEFQLNDVPNFPFWFTPGQFTGNIVISKDASHVRHFRLYVPSNR 3130492 Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/44 (70%), Positives = 35/44 (80%), Gaps = 0/44 (0%) Frame = -1 Query 60 VKRHEAGLKALGADGLFFFSSLDTDHDLYLSPEEFKPIAEKLTG 103 V E ++ LG +GLF FSSLDTDHDL LSPEEF+PIAEKLTG Sbjct 3133221 VAHQEEAVQTLGVEGLFLFSSLDTDHDLCLSPEEFRPIAEKLTG 3133090 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/29 (86%), Positives = 29/29 (100%), Gaps = 0/29 (0%) Frame = -3 Query 305 KTLNVDMEWLYGASETSNMEVDIGYLPQM 333 ++LNVDMEWLYGASE+SNMEVDIGYLPQ+ Sbjct 3129910 RSLNVDMEWLYGASESSNMEVDIGYLPQV 3129824 Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/64 (33%), Positives = 33/64 (52%), Gaps = 3/64 (5%) Frame = -3 Query 1 MATDVDK-TPAGEQKDDHEDRGTPssrrgrsrFTQISSLFIIAAIPVISFCIKYYLDIQF 59 MA DVDK TP E+ + +P + + +L + A+P+ F IKYY + Q Sbjct 3134764 MAADVDKSTPERERSTGGSGQRSPGCGAWFRGW--MWTLLAVCAVPLAGFGIKYYQNSQL 3134591 Query 60 VKRH 63 ++RH Sbjct 3134590 LRRH 3134579 Lambda K H a alpha 0.318 0.136 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 101535450220 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40