TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00001003_2.0 # Protein # Selenoprotein M (SELENOM) # Cod Length=92 Score E Sequences producing significant alignments: (Bits) Value KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 75.5 3e-15 KQ557203.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 31.2 1.4 KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 29.3 6.7 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 75.5 bits (184), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 35/47 (74%), Positives = 41/47 (87%), Gaps = 0/47 (0%) Frame = +1 Query 45 RIALSDMSRAEINDLLVRLGFYMKSQAEEEVPEEFRLLPAKDSPFKD 91 RIALSDM+R+EIN+LL +LGFY K+Q E+EVPEE R PAKDSPFKD Sbjct 17387659 RIALSDMTRSEINELLEKLGFYKKAQPEDEVPEELRFAPAKDSPFKD 17387799 Score = 62.8 bits (151), Expect = 7e-11, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 37/58 (64%), Gaps = 3/58 (5%) Frame = +3 Query 18 SHNLVMKHIPGADPELVLLNHYYEELDRIALSDMSRAEINDLLVRLGFYMKSQAEEEV 75 SHNLVMKHIPGADPELVLLNHYYEELD + N +V FY+ + +V Sbjct 17383236 SHNLVMKHIPGADPELVLLNHYYEELDVSVILFFFFFLKNVFIV---FYISKETHRQV 17383400 Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 28/51 (55%), Gaps = 5/51 (10%) Frame = +2 Query 33 LVLLNHYYEELDRIALSDMSRAEINDLLVRLGFYMKSQAEEEVPEEFRLLP 83 L L H + + +M EI+ LL LGFY +SQ E+VPEEF+ P Sbjct 27573887 LCFLKH-----QTVPVKNMKADEISSLLESLGFYKRSQKGEKVPEEFQNFP 27574024 Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats. Identities = 12/15 (80%), Positives = 13/15 (87%), Gaps = 0/15 (0%) Frame = +3 Query 1 FQSCGGXQLNRLREV 15 Q+CGG QLNRLREV Sbjct 17382909 LQTCGG*QLNRLREV 17382953 > KQ557203.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold2, whole genome shotgun sequence Length=27041879 Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats. Identities = 14/36 (39%), Positives = 22/36 (61%), Gaps = 0/36 (0%) Frame = +3 Query 12 LREVPLSHNLVMKHIPGADPELVLLNHYYEELDRIA 47 L V LSHN+++K +PG+ L L H+Y +R + Sbjct 13704147 LETVDLSHNMLLKVLPGSLDRLPKLTHFYLHSNRFS 13704254 > KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold24, whole genome shotgun sequence Length=55650406 Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 17/27 (63%), Gaps = 0/27 (0%) Frame = +1 Query 37 NHYYEELDRIALSDMSRAEINDLLVRL 63 NH+Y EL I LSD+S I+ L++ Sbjct 30807133 NHFYTELSFIVLSDVSYINISRFLIKF 30807213 Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 18/34 (53%), Gaps = 0/34 (0%) Frame = -3 Query 13 REVPLSHNLVMKHIPGADPELVLLNHYYEELDRI 46 R +PL H+L++ PG P L LLN D + Sbjct 33249524 RSIPLMHSLLLFIFPGFAPSLCLLNSTDRTTDYV 33249423 Lambda K H a alpha 0.319 0.139 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5903261350 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40