TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00001097_2.0 # Protein # Selenoprotein L (SELENOL) # Stickleback Length=310 Score E Sequences producing significant alignments: (Bits) Value KQ557207.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 72.0 5e-35 > KQ557207.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold6, whole genome shotgun sequence Length=23593460 Score = 72.0 bits (175), Expect(3) = 5e-35, Method: Compositional matrix adjust. Identities = 32/45 (71%), Positives = 39/45 (87%), Gaps = 0/45 (0%) Frame = +2 Query 175 ANQVALQARSLRVLVVSFGGLEGAHLWLEQTGCTFDMLLDPQRKV 219 A Q L+A+S+RV+VVSFG +EGA LWLEQTGCTF+MLLD Q+KV Sbjct 1678985 ALQTLLEAQSVRVMVVSFGSVEGAQLWLEQTGCTFEMLLDSQKKV 1679119 Score = 65.1 bits (157), Expect(3) = 5e-35, Method: Compositional matrix adjust. Identities = 30/43 (70%), Positives = 32/43 (74%), Gaps = 0/43 (0%) Frame = +2 Query 99 WDSFLESVDSRLQTTDRQLSGGKIADHLSPDTAFTDGRSGESV 141 WDSFL+SVD LQ TD QLSG K AD LSPD+ FTD RS E V Sbjct 1678541 WDSFLQSVDKDLQMTDEQLSGAKPADSLSPDSVFTDARSKEQV 1678669 Score = 53.9 bits (128), Expect(3) = 5e-35, Method: Compositional matrix adjust. Identities = 29/40 (73%), Positives = 33/40 (83%), Gaps = 2/40 (5%) Frame = +3 Query 140 SVTLGRYLGQGQKPLLVLIRHFGXLPXRDHVAELEANQVA 179 SVTLG++LGQ K LLVLI +FG LP RDHVAELE NQV+ Sbjct 1678752 SVTLGQFLGQ--KLLLVLIGNFGWLP*RDHVAELETNQVS 1678865 Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 32/48 (67%), Positives = 41/48 (85%), Gaps = 0/48 (0%) Frame = +3 Query 218 KVYRSFGLGSSYAKVMRFGSMLLYSEYGAVDRDFPDFPPYLLEDIYQM 265 +VYRSFGLGSS++KV++FG ++ SE+ A DRDFPDFP LLEDIYQ+ Sbjct 1679376 QVYRSFGLGSSFSKVLKFGCLMQLSEFSAADRDFPDFPHRLLEDIYQV 1679519 Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/35 (80%), Positives = 32/35 (91%), Gaps = 0/35 (0%) Frame = +1 Query 266 GGDFLLDEGGKVLLSHLSQNPMDRPTVKAVLQAAE 300 GGDFLLDE GKVLLSH S+NP+DRP++K VLQAAE Sbjct 1681948 GGDFLLDETGKVLLSHPSKNPLDRPSLKDVLQAAE 1682052 Score = 43.5 bits (101), Expect(2) = 2e-05, Method: Compositional matrix adjust. Identities = 19/28 (68%), Positives = 22/28 (79%), Gaps = 0/28 (0%) Frame = +1 Query 35 AQESLEKFVPYKITTLLGLITAGADFYR 62 + SL+ FVP+KITTL GLITAG FYR Sbjct 1677022 SSASLQTFVPHKITTLFGLITAGEHFYR 1677105 Score = 26.9 bits (58), Expect(2) = 2e-05, Method: Compositional matrix adjust. Identities = 12/22 (55%), Positives = 13/22 (59%), Gaps = 0/22 (0%) Frame = +2 Query 60 FYRSIGVKKKTEAEKVWQRFYH 81 F IGVK K EAE VW + Y Sbjct 1677188 FLSRIGVKTKGEAEAVWLKLYQ 1677253 Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/35 (66%), Positives = 30/35 (86%), Gaps = 1/35 (3%) Frame = +2 Query 1 MAEDATVVSEETLTSALALMVNLGKVLLETAKHEA 35 MAED TV SEETLT AL+L+V+LG++LL+ A+ EA Sbjct 1676543 MAEDVTV-SEETLTGALSLLVSLGQILLQNAQQEA 1676644 Lambda K H a alpha 0.318 0.135 0.391 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 44628400656 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40