TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000633_2.0 # Protein # Selenoprotein K (SELENOK) # Zebrafish

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557201.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  58.2    3e-09
  KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  29.3    6.6  


> KQ557201.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold0, 
whole genome shotgun sequence
Length=29966060

 Score = 58.2 bits (139),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 27/31 (87%), Positives = 29/31 (94%), Gaps = 0/31 (0%)
 Frame = +2

Query  6        NGQVLDSRSRSPWSLSFLTDFFWGAVEFIGL  36
                +GQVLDSRS+SPWSLSFLTD FWGAVEFI L
Sbjct  8675462  SGQVLDSRSQSPWSLSFLTDMFWGAVEFISL  8675554


 Score = 31.2 bits (69),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 16/23 (70%), Positives = 19/23 (83%), Gaps = 1/23 (4%)
 Frame = +2

Query  38       FQTLVQPDLSKDGNNSASSRFSD  60
                F+T++ PDLSK G N ASSRFSD
Sbjct  8676248  FRTILHPDLSKKG-NVASSRFSD  8676313


> KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, 
whole genome shotgun sequence
Length=26077971

 Score = 29.3 bits (64),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query  11        DSRSRSPWSLSFLTDFFWGAVEFIGLFFQTLVQP--DLSKDGNNSAS  55
                 DSRS +P SL  L  F + A+  +    +  VQP  DL +D  + +S
Sbjct  13297273  DSRSSAPQSLGILVHFLFAALLQLHQVMEMSVQPCSDLVRDIQSDSS  13297413



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5903260100


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40