TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000636_2.0 # Protein # Selenoprotein J1 (SELENOJ1) # Zebrafish Length=342 Score E Sequences producing significant alignments: (Bits) Value KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 137 9e-41 KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 121 2e-31 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 90.5 3e-18 KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 36.6 0.55 > KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold13, whole genome shotgun sequence Length=22457735 Score = 137 bits (345), Expect(2) = 9e-41, Method: Compositional matrix adjust. Identities = 71/127 (56%), Positives = 82/127 (65%), Gaps = 33/127 (26%) Frame = +3 Query 146 GCETDTQIDGVTKLAPIVACYAGKPEMLEKVEEAVRVTQNNDLCVAETLAAA-------- 197 GC+ D QIDGVTKLAP+VA +AG+PEMLEKVE A RVTQNND+CVA TLAAA Sbjct 5883867 GCDVDCQIDGVTKLAPVVAMFAGRPEMLEKVESATRVTQNNDMCVAVTLAAAR*GWGCRG 5884046 Query 198 -------------------------RFLEHFILNGPDPKALDAVLKQLSDPERKNPQELD 232 RFLE F+L GPDP ALDAV+ QLS+P RKNPQ+LD Sbjct 5884047 ERRFRRIAS*APGAS*IVVRLCANSRFLELFVLKGPDPDALDAVVAQLSNPNRKNPQDLD 5884226 Query 233 KAVIGHI 239 +AVIG + Sbjct 5884227 RAVIGEL 5884247 Score = 52.8 bits (125), Expect(2) = 9e-41, Method: Compositional matrix adjust. Identities = 23/34 (68%), Positives = 28/34 (82%), Gaps = 0/34 (0%) Frame = +1 Query 115 APRPQLPIEGPWRHASLKGFIKNVDAGKEETGCE 148 P+ LPI+GPWR+ASLK F++NVDAGKEE G E Sbjct 5883676 GPKAILPIDGPWRNASLKAFLRNVDAGKEEPGDE 5883777 Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 40/63 (63%), Positives = 53/63 (84%), Gaps = 1/63 (2%) Frame = +1 Query 24 QPLHWVYDLSKLSVLLSQ-SPQPEFRPESANPFYRRNTGQQSCYGDQAFILLESLSECGG 82 QP+HW+Y+ +L+ +LS P+PEFRP SANPFYRR TG+Q+CYGDQA++LLESLS+CGG Sbjct 5881510 QPMHWIYNPDRLNEVLSDLEPRPEFRPLSANPFYRRTTGEQTCYGDQAYVLLESLSQCGG 5881689 Query 83 LNV 85 + Sbjct 5881690 TGL 5881698 Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/67 (61%), Positives = 44/67 (66%), Gaps = 7/67 (10%) Frame = +3 Query 244 DNLNKKPKELIPAVFPNTXGLPGAFQAALHGVLTASSYEQAVRDTMSCGGCTCSRSSFIG 303 DN L PA LPGAFQAALHGVLT E+AVRDT+ GGCT SR+SFIG Sbjct 5885100 DNWKHACGRLCPA-------LPGAFQAALHGVLTMKQLEEAVRDTIRRGGCTASRASFIG 5885258 Query 304 ACIGAQV 310 AC GAQV Sbjct 5885259 ACFGAQV 5885279 Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 6/52 (12%) Frame = +1 Query 70 AFILLESLSECG------GLNVEDFKQRTYKFFGPGSEYDTPVNDPYRDKGA 115 F+L+ SL+ ++V+D +R Y+FFGPG+ YD PVNDPYR KG Sbjct 5881909 VFLLI*SLNNYSF*LFLIDVDVKDLTRRFYEFFGPGTLYDLPVNDPYRKKGG 5882064 Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/33 (52%), Positives = 22/33 (67%), Gaps = 0/33 (0%) Frame = +1 Query 309 QVGLEGIPASWKSKTLRCNTLLDLSRKVVALQQ 341 Q GL GIP SW+ +TLR LL+L+ VV +Q Sbjct 5886265 QTGLRGIPESWRKRTLRYPLLLELAENVVGKRQ 5886363 Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust. Identities = 18/29 (62%), Positives = 20/29 (69%), Gaps = 0/29 (0%) Frame = +2 Query 237 GHIHQVKDNLNKKPKELIPAVFPNTXGLP 265 HI QVK+NL K +LIPAVF NT G P Sbjct 5884748 AHIGQVKENLAKASHQLIPAVFTNT*GKP 5884834 > KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold20, whole genome shotgun sequence Length=29933922 Score = 121 bits (303), Expect(2) = 2e-31, Method: Compositional matrix adjust. Identities = 61/102 (60%), Positives = 69/102 (68%), Gaps = 28/102 (27%) Frame = +3 Query 237 GHIHQVKDNLNKKPKELIPAVFPNT----------------------------XGLPGAF 268 GH+HQVK+NL+K P+ELIPAVF NT GLPGAF Sbjct 7537944 GHLHQVKENLSKSPQELIPAVFLNT*GVFNKLPPTSLNSSLTRIRQLTGAILAAGLPGAF 7538123 Query 269 QAALHGVLTASSYEQAVRDTMSCGGCTCSRSSFIGACIGAQV 310 QAALHGVLTA+ +E AVRDTMSCGGCTCSR+SFIGAC+GAQV Sbjct 7538124 QAALHGVLTANQFETAVRDTMSCGGCTCSRASFIGACVGAQV 7538249 Score = 37.0 bits (84), Expect(2) = 2e-31, Method: Compositional matrix adjust. Identities = 15/28 (54%), Positives = 22/28 (79%), Gaps = 0/28 (0%) Frame = +2 Query 309 QVGLEGIPASWKSKTLRCNTLLDLSRKV 336 Q+GLEGIPASW S+T R ++L ++K+ Sbjct 7538330 QIGLEGIPASWLSRTSRSTSVLAHAKKI 7538413 Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/171 (45%), Positives = 89/171 (52%), Gaps = 54/171 (32%) Frame = +1 Query 82 GLNVEDFKQRTYKFFGPGSEYDTPVNDPYRDKGAPRP-------------------QLPI 122 GLNV+D KQRT KFFGPGSEYDTPVNDPYRD+ + I Sbjct 7536100 GLNVDDLKQRTLKFFGPGSEYDTPVNDPYRDRNGKKSVHLI*LRATFLIKLLYQCGHYFI 7536279 Query 123 EGPWRHAS---------LKGFIKNVDAGKEETGCET------------------------ 149 P A+ L+ F+K G+ G T Sbjct 7536280 SRPKTSAAY*RTMETSKLEEFLKERRCGQRGDG*RTFTG*RLDFKRHILFKHLVVFVAGC 7536459 Query 150 --DTQIDGVTKLAPIVACYAGKPEMLEKVEEAVRVTQNNDLCVAETLAAAR 198 D QIDG+ KLAPIVA YAG+P+MLEKVE+A+RVTQNND CVAETLAAAR Sbjct 7536460 EMDCQIDGIAKLAPIVAFYAGQPDMLEKVEQAIRVTQNNDECVAETLAAAR 7536612 Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 48/59 (81%), Positives = 52/59 (88%), Gaps = 0/59 (0%) Frame = +2 Query 24 QPLHWVYDLSKLSVLLSQSPQPEFRPESANPFYRRNTGQQSCYGDQAFILLESLSECGG 82 QPLHWVYDL KL +L+Q P PEFR ESANPFYRR TGQQSCYGDQA++LLESLSECGG Sbjct 7535768 QPLHWVYDLQKLKGILAQDPNPEFRSESANPFYRRQTGQQSCYGDQAYVLLESLSECGG 7535944 Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 33/43 (77%), Positives = 37/43 (86%), Gaps = 0/43 (0%) Frame = +3 Query 195 AAARFLEHFILNGPDPKALDAVLKQLSDPERKNPQELDKAVIG 237 ++ RFLEHFIL GPDPKALD VL QLSDP RK PQ+LD+AVIG Sbjct 7536759 SSLRFLEHFILTGPDPKALDVVLNQLSDPSRKQPQDLDRAVIG 7536887 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/32 (88%), Positives = 29/32 (91%), Gaps = 0/32 (0%) Frame = +2 Query 115 APRPQLPIEGPWRHASLKGFIKNVDAGKEETG 146 PRPQLPIEGPWR ASLK F+KNVDAGKEETG Sbjct 7536284 GPRPQLPIEGPWRQASLKSFLKNVDAGKEETG 7536379 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 44/67 (66%), Positives = 53/67 (79%), Gaps = 3/67 (4%) Frame = -2 Query 245 NLN-KKPKELIPAVFPNTXGLPGAFQAALHGVLTASSYEQAVRDTMSCGGCTCSRSSFIG 303 N N + +++ A+ T GLP AFQAALHGVLTA ++ AVRDTMSCGGCTCSR+SFIG Sbjct 293358 NFNLTQTRQVTGAIL--TEGLPDAFQAALHGVLTAKQFKTAVRDTMSCGGCTCSRASFIG 293185 Query 304 ACIGAQV 310 AC+GAQV Sbjct 293184 ACVGAQV 293164 Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust. Identities = 17/23 (74%), Positives = 21/23 (91%), Gaps = 0/23 (0%) Frame = -1 Query 239 IHQVKDNLNKKPKELIPAVFPNT 261 IHQV++NL+K P+ELI AVFPNT Sbjct 293461 IHQVQENLSKPPQELILAVFPNT 293393 > KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold24, whole genome shotgun sequence Length=55650406 Score = 36.6 bits (83), Expect = 0.55, Method: Compositional matrix adjust. Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 0/31 (0%) Frame = -3 Query 309 QVGLEGIPASWKSKTLRCNTLLDLSRKVVAL 339 Q+GLEGIPASW S+T R ++L ++ ++L Sbjct 52418945 QIGLEGIPASWLSRTSRSTSMLAHAKMALSL 52418853 Lambda K H a alpha 0.317 0.134 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 51948397380 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40