TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000635_2.0 # Protein # Selenoprotein I (SELENOI) # Zebrafish Length=397 Score E Sequences producing significant alignments: (Bits) Value KQ557207.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 152 2e-51 KQ557209.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 65.5 7e-10 KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 63.9 2e-09 > KQ557207.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold6, whole genome shotgun sequence Length=23593460 Score = 152 bits (384), Expect(3) = 2e-51, Method: Compositional matrix adjust. Identities = 83/91 (91%), Positives = 89/91 (98%), Gaps = 0/91 (0%) Frame = -1 Query 98 YTLDGVDGKQARRTNSSTPLGELFDHGLDSWACVFFVATVYSVFGRGETGvsvvtlyyll 157 ++ DGVDGKQARRTNSSTPLGELFDHGLDSWAC+FFVATVYS+FGRGE+GV VVTLYY+L Sbjct 17435114 FSPDGVDGKQARRTNSSTPLGELFDHGLDSWACIFFVATVYSIFGRGESGVGVVTLYYIL 17434935 Query 158 wvvlFSFILSHWEKYNTGILFLPWGYDISQV 188 WVVLFSFILSHWEKYNTGILFLPWGYDISQV Sbjct 17434934 WVVLFSFILSHWEKYNTGILFLPWGYDISQV 17434842 Score = 63.2 bits (152), Expect(3) = 2e-51, Method: Compositional matrix adjust. Identities = 31/44 (70%), Positives = 37/44 (84%), Gaps = 0/44 (0%) Frame = -2 Query 189 TISIVYIITAVVGVETWYKPVFLNIHYRDLFTVMIIGCLFVVTL 232 TIS+VY++TAVVGVETWY+PV N+ YRDLFT MIIG L +V L Sbjct 17434729 TISLVYLVTAVVGVETWYQPVIFNLLYRDLFTFMIIGGL*LVAL 17434598 Score = 31.6 bits (70), Expect(3) = 2e-51, Method: Compositional matrix adjust. Identities = 14/17 (82%), Positives = 14/17 (82%), Gaps = 0/17 (0%) Frame = -1 Query 225 GCLFVVTLPMSLYNVFK 241 GC F VTLPMSLYNV K Sbjct 17434535 GCSFTVTLPMSLYNVLK 17434485 Score = 71.2 bits (173), Expect(2) = 4e-24, Method: Compositional matrix adjust. Identities = 45/62 (73%), Positives = 55/62 (89%), Gaps = 0/62 (0%) Frame = -2 Query 240 FKAYRNNTLKHSSLYEAllpffspvllfvlsTLWISFSPTNIVQKQPRIFYLMVGTAFSN 299 F+AYR+NTLKHS+LYEA LPF SPVLLFVLST W+ FSP+ I++ QPR++ LMVGTAF+N Sbjct 17433478 FRAYRSNTLKHSNLYEAFLPFLSPVLLFVLSTAWVVFSPSKILELQPRMYCLMVGTAFAN 17433299 Query 300 VT 301 VT Sbjct 17433298 VT 17433293 Score = 63.2 bits (152), Expect(2) = 4e-24, Method: Compositional matrix adjust. Identities = 47/88 (53%), Positives = 62/88 (70%), Gaps = 2/88 (2%) Frame = -1 Query 302 CKLIVCQMSNTRCKplsllllpmsivvllvisGTVQGGESLVLFIWTAVVLLTHIHYGVS 361 CKLIVCQMSNTRC+PL+ LLLPM++VV ++ V E+L+L++WTA V+LTHIHYGVS Sbjct 17433206 CKLIVCQMSNTRCEPLTWLLLPMTVVVGGAVTR-VFTNETLLLYLWTAAVILTHIHYGVS 17433030 Query 362 VVKQLSDHFNIFAFSLKKPNSDXQDEEK 389 VV+ H I AF + S+ +K Sbjct 17433029 VVRA-PAHILITAFVVVG*ESNQSRLDK 17432949 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/45 (71%), Positives = 35/45 (78%), Gaps = 0/45 (0%) Frame = -2 Query 39 KVLPTWLAPNLITFTGFMFLVLTFTMLSFFDFDFYASGEGHTHVP 83 + LPTWLAPNLITFTGFMFLVL F ML+F+DFDF AS T P Sbjct 17438878 QFLPTWLAPNLITFTGFMFLVLNFLMLAFYDFDFTASCRSITSFP 17438744 Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/35 (80%), Positives = 32/35 (91%), Gaps = 0/35 (0%) Frame = -3 Query 363 VKQLSDHFNIFAFSLKKPNSDXQDEEKIGLKAAEV 397 VKQLSDHF+IFAFSLKKP+ D Q+EE+IGL AAEV Sbjct 17431710 VKQLSDHFSIFAFSLKKPSRD*QEEERIGLTAAEV 17431606 Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/25 (80%), Positives = 24/25 (96%), Gaps = 0/25 (0%) Frame = -1 Query 16 KYSAVDSNPLSIYVMHPFWNSVVKV 40 +YSAVD+NPLS+YVMHPFWN +VKV Sbjct 17440106 QYSAVDTNPLSVYVMHPFWNFLVKV 17440032 Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/26 (73%), Positives = 22/26 (85%), Gaps = 0/26 (0%) Frame = -3 Query 75 SGEGHTHVPSWVWIAAGLFNFLAYTL 100 S G+ HVPS VW+AAG+FNFLAYTL Sbjct 17438349 SAAGNQHVPSLVWVAAGIFNFLAYTL 17438272 > KQ557209.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold8, whole genome shotgun sequence Length=19682451 Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 0/47 (0%) Frame = -3 Query 81 HVPSWVWIAAGLFNFLAYTLDGVDGKQARRTNSSTPLGELFDHGLDS 127 P W ++ + L F+ +LD +DGKQARRTNSS+PLGELFDHG D+ Sbjct 6824602 QAPPWAFLLSALGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDA 6824462 Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/69 (32%), Positives = 38/69 (55%), Gaps = 9/69 (13%) Frame = -3 Query 4 VTQEQLSGFDKYKYSAVDSN----PLSIYVMHPFWNSVVKVLPTWLAPNLITFTGFMFLV 59 +T QL +++KYSA + P +Y WN +V +PTW+APN +T G + + Sbjct 6831562 LTPAQLKRLEEHKYSASGRSLFEPPCQVY-----WNWLVLQIPTWVAPNTLTIVGLLINI 6831398 Query 60 LTFTMLSFF 68 L+ +L ++ Sbjct 6831397 LSTVVLVWY 6831371 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 0/47 (0%) Frame = +3 Query 81 HVPSWVWIAAGLFNFLAYTLDGVDGKQARRTNSSTPLGELFDHGLDS 127 P W ++ + F+ +LD +DGKQARRTNSS+PLGELFDHG DS Sbjct 21578637 QAPLWAYLMCAVGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDS 21578777 Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (2%) Frame = +2 Query 12 FDKYKYSAVDSNPLSIYVMHPFWNSVVKVLPTWLAPNLITFTGFMFLVLTFTMLSFF 68 F +YS+ + L +M +W +V +P+W+APNLIT G V T +L ++ Sbjct 21577952 FRPCRYSSAGRSLLEP-LMQRYWEWLVGQVPSWIAPNLITIIGLATNVFTTLVLVYY 21578119 Lambda K H a alpha 0.326 0.139 0.446 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 64463224917 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40