TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000634_2.0 # Protein # Selenoprotein H (SELENOH) # Zebrafish

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  60.1    1e-09
  KQ557212.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  32.3    1.5  


> KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, 
whole genome shotgun sequence
Length=30170098

 Score = 60.1 bits (144),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 0/47 (0%)
 Frame = +2

Query  49        RVYGRNAVVVREALADSHPELKVMINPHNPRRNSFEITLMDGERADV  95
                 RVYGRNA  V+ AL  + P L V++NP  PRRNSFEITL+DG + ++
Sbjct  15575111  RVYGRNAEEVKSALLAARPGLTVVLNPEKPRRNSFEITLLDGGKGEM  15575251


 Score = 52.4 bits (124),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 23/32 (72%), Positives = 28/32 (88%), Gaps = 0/32 (0%)
 Frame = +3

Query  96        LWSGIKKGPPRKLKFPEPAEVVTALKQALEKE  127
                 LW+GIKKGPPRKLKFP+P  VV AL++AL+ E
Sbjct  15575592  LWTGIKKGPPRKLKFPQPDSVVAALQEALKTE  15575687


> KQ557212.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold11, 
whole genome shotgun sequence
Length=29398440

 Score = 32.3 bits (72),  Expect = 1.5, Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (78%), Gaps = 0/18 (0%)
 Frame = +2

Query  70        KVMINPHNPRRNSFEITL  87
                 K M+NPHNP RN F +T+
Sbjct  22078094  KTMVNPHNPSRNCFFLTI  22078147



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5903239475


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40