TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000615_2.0 # Protein # Fish selenoprotein 15 (SELENOE) #
Zebrafish

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  75.1    2e-14


> KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, 
whole genome shotgun sequence
Length=33259606

 Score = 75.1 bits (183),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 40/41 (98%), Gaps = 0/41 (0%)
 Frame = +2

Query  98        MKADEISSLLDSLGFYKRSEKGEEVPEEFKHFPLRAPRDEL  138
                 MKADEISSLL+SLGFYKRS+KGE+VPEEF++FPL APRDEL
Sbjct  27573926  MKADEISSLLESLGFYKRSQKGEKVPEEFQNFPLHAPRDEL  27574048


 Score = 44.3 bits (103),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 21/27 (78%), Positives = 24/27 (89%), Gaps = 0/27 (0%)
 Frame = +1

Query  38        LVAPSVVGXSIKKMPELYNFLMERWAL  64
                 L APSVVG +IKKMPEL++FLMER AL
Sbjct  27573172  LQAPSVVG*AIKKMPELHHFLMERSAL  27573252


 Score = 39.7 bits (91),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 16/19 (84%), Positives = 17/19 (89%), Gaps = 0/19 (0%)
 Frame = +2

Query  66        HNLEYDSGEDKNPRLIFYN  84
                 HNLEYDS E+K PRLIFYN
Sbjct  27573449  HNLEYDSSEEKKPRLIFYN  27573505


 Score = 36.6 bits (83),  Expect = 0.066, Method: Compositional matrix adjust.
 Identities = 16/35 (46%), Positives = 24/35 (69%), Gaps = 0/35 (0%)
 Frame = +1

Query  98        MKADEISSLLDSLGFYKRSEKGEEVPEEFKHFPLR  132
                 M   EI+ LL+ LGFYK+++  +EVPEE +  P +
Sbjct  17387677  MTRSEINELLEKLGFYKKAQPEDEVPEELRFAPAK  17387781



Lambda      K        H        a         alpha
   0.315    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 7083882870


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40