TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000664_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Zebrafish Length=175 Score E Sequences producing significant alignments: (Bits) Value KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 47.0 4e-05 KQ557205.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 45.1 2e-04 KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 38.9 0.021 KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 38.1 0.040 KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 37.0 0.11 KQ557206.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 36.6 0.12 KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 35.0 0.48 KQ557201.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 34.3 0.78 KQ557209.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 33.9 1.2 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 32.7 2.6 KQ557219.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 31.6 6.3 KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 31.6 6.4 KQ557220.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 31.2 8.0 KQ557212.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 30.8 9.7 > KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold20, whole genome shotgun sequence Length=29933922 Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 28/32 (88%), Gaps = 0/32 (0%) Frame = -2 Query 43 NAGYGFVELADDTAVERCLRKVNGKPLPGATP 74 +AGY FVELAD+ +V+RC++++NGK +PG+ P Sbjct 8998484 SAGYCFVELADEASVDRCVQRLNGKLVPGSNP 8998389 Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 27/33 (82%), Gaps = 0/33 (0%) Frame = -1 Query 9 LEPYMDEDFICRAFAQMGETVVKIRLIRDKITG 41 L+PYMDE+F+ +AF+ MGE+ + +++I +ITG Sbjct 8998830 LDPYMDENFVKQAFSGMGESPLGVKIITHRITG 8998732 Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 25/37 (68%), Gaps = 1/37 (3%) Frame = -1 Query 138 GFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174 GFV F E EQK A+ + QG T LG K LRLS+A ++ Sbjct 8996502 GFVKFADESEQKAAIEECQG-TMLGGKTLRLSIAVAK 8996395 > KQ557205.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold4, whole genome shotgun sequence Length=26266306 Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats. Identities = 20/67 (30%), Positives = 38/67 (57%), Gaps = 0/67 (0%) Frame = -2 Query 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62 ++++GNL+P +DE + F+ G + +++RD TG + GY F+ A A + + Sbjct 12140577 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 12140398 Query 63 KVNGKPL 69 +NG+ L Sbjct 12140397 AMNGQYL 12140377 Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Frame = -2 Query 44 AGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYGKQGESSTFSLFVSDLTP 103 +GYGFVE + + ++ +N L G K ++++++ + ++F+ +L P Sbjct 12140718 SGYGFVEFLSEEDADYAIKIMNMIKLYG----KPIRVNKASAHNKNLDVGANIFIGNLDP 12140551 Query 104 DVDDGMLYEFFHYHFSSCCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQG 157 ++D+ +LY+ F + KI+ D + G+SK F++F S A+ + G Sbjct 12140550 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 12140386 > KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold24, whole genome shotgun sequence Length=55650406 Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust. Identities = 17/37 (46%), Positives = 24/37 (65%), Gaps = 0/37 (0%) Frame = +3 Query 33 RLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPL 69 +++RDK TGK GYGFV D R +R++NG+ L Sbjct 41930160 QVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGQRL 41930270 Score = 37.0 bits (84), Expect = 0.090, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 20/173 (12%) Frame = -3 Query 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62 +L++GNLE + E+ I RAF + G ++ I+ + G+N YGF++ + R Sbjct 34992920 TLFLGNLESGLTENDIRRAFERFG--LITEVDIKRTVRGQNNTYGFIKFENLDMAHRAKV 34992747 Query 63 KVNGKPLPGATPPKRFKLSRSNYGKQGESSTFSLFVSDLTPDVD-DGMLYEFFHYHFSSC 121 ++GK + G +P K YGK + T L+V L P V + EF + Sbjct 34992746 AMSGK-VVGHSPIK------IGYGKP--TPTTRLWVGGLGPWVPVTALAKEFDRF----- 34992609 Query 122 CSGKIVLDANGHSKCCGFVSFESEREQKRALVDLQG-ATGLGKKALRLSLASS 173 G I A ++ +ES A ++G G + LR+ A + Sbjct 34992608 --GTIRTIAYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFAET 34992456 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (57%), Gaps = 1/51 (2%) Frame = +1 Query 3 SLWMGNLEPYMDEDFICRAFAQMGE-TVVKIRLIRDKITGKNAGYGFVELA 52 ++ + N+ P D I A A + IRLI+DK TG+N G+ FV+L+ Sbjct 15217216 AIILRNIAPLTTVDAILTALAPYANLSANNIRLIKDKQTGQNRGFAFVQLS 15217368 > KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Length=30170098 Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 0/40 (0%) Frame = -2 Query 32 IRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPG 71 +RL+ D+ TGK GYGF E D +R +NG+ G Sbjct 8312019 LRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG 8311900 > KQ557206.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold5, whole genome shotgun sequence Length=24035278 Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/77 (29%), Positives = 36/77 (47%), Gaps = 1/77 (1%) Frame = -1 Query 8 NLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGK 67 NL P DE + + F G V +++IRD T K G+GFV + + + +NG Sbjct 12256165 NLAPDADESILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGY 12255989 Query 68 PLPGATPPKRFKLSRSN 84 L FK ++++ Sbjct 12255988 RLGDRVLQVSFKTNKTH 12255938 > KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, whole genome shotgun sequence Length=26077971 Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust. Identities = 22/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +3 Query 8 NLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGK 67 NL DE + + F G V +++IRD T K G+GFV + + + +NG Sbjct 18325482 NLGQDADESILWQMFGPFG-AVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAITSLNGY 18325658 Query 68 PLPGATPPKRFKLSRSN 84 L FK S+ + Sbjct 18325659 RLGDKILQVSFKTSKGH 18325709 > KQ557201.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold0, whole genome shotgun sequence Length=29966060 Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust. Identities = 18/52 (35%), Positives = 28/52 (54%), Gaps = 1/52 (2%) Frame = +3 Query 2 NSLWMGNLEPYMDEDFICRAFAQMGE-TVVKIRLIRDKITGKNAGYGFVELA 52 +L + NL P+ D I A A + +RLI+DK T N G+ F++L+ Sbjct 14999772 TALILRNLGPHTTVDAILSALAPFATLSPSNVRLIKDKHTHLNRGFAFLQLS 14999927 > KQ557209.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold8, whole genome shotgun sequence Length=19682451 Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/69 (25%), Positives = 30/69 (43%), Gaps = 7/69 (10%) Frame = -3 Query 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62 S+W+ LE C ++ ++ +++DK + ++ G FV D A C R Sbjct 12747763 SVWLVALENI*SAHNFCAVYS-------RVTIVKDKFSRQSKGVAFVLFLDREAAHNCAR 12747605 Query 63 KVNGKPLPG 71 VN K + Sbjct 12747604 AVNNKQVSN 12747578 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust. Identities = 29/97 (30%), Positives = 40/97 (41%), Gaps = 24/97 (25%) Frame = -3 Query 53 DDTAVERCLRKVNGKPLPG-------------ATPPKRFKLSRSNYGKQGESSTFS---- 95 D++ +ER + + G L G T F LS N Q E+S FS Sbjct 4470009 DESIMERLAQTLKGTVLEGLEFEISGVWLSFLIT*KSTFLLSFKNRAVQEETSCFSHLSP 4469830 Query 96 -LFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDAN 131 LF+ L P ML HFS S K+++D+N Sbjct 4469829 ALFLWKLLPRTQH*ML------HFSEISSKKVLVDSN 4469737 > KQ557219.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold18, whole genome shotgun sequence Length=33548221 Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust. Identities = 17/40 (43%), Positives = 21/40 (53%), Gaps = 0/40 (0%) Frame = +3 Query 134 SKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASS 173 S CCGF S SE Q L+ +GA K R+ L+SS Sbjct 31144389 SSCCGFFSLCSESNQPVPLLACRGAALRSTKTFRVQLSSS 31144508 > KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold23, whole genome shotgun sequence Length=30408201 Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 28/54 (52%), Gaps = 7/54 (13%) Frame = +1 Query 23 AQMGETVVKIR-------LIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPL 69 AQ E +V++ L+ ++TG + GYGFVE + R ++ G+PL Sbjct 28879426 AQQFEELVRLYGNIERSFLVYSELTGHSKGYGFVEYMKKDSASRARSELLGRPL 28879587 > KQ557220.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold19, whole genome shotgun sequence Length=31600912 Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust. Identities = 18/63 (29%), Positives = 34/63 (54%), Gaps = 2/63 (3%) Frame = +1 Query 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62 +++G + + ED + F +G + ++RL+ D GKN GY FV + +R +R Sbjct 13289704 EIFVGKIPRDVYEDELVPVFETVGR-IYEMRLMMD-FDGKNRGYAFVMYTEKHEAKRAVR 13289877 Query 63 KVN 65 ++N Sbjct 13289878 ELN 13289886 > KQ557212.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold11, whole genome shotgun sequence Length=29398440 Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 19/33 (58%), Gaps = 0/33 (0%) Frame = -1 Query 36 RDKITGKNAGYGFVELADDTAVERCLRKVNGKP 68 + ++TG++ GYGFV+ D LR +N P Sbjct 12620268 KGRVTGQSLGYGFVQFRDHEQALATLRYLNNNP 12620170 Lambda K H a alpha 0.321 0.137 0.412 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 14640016848 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40