TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000665_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Zebrafish Length=316 Score E Sequences producing significant alignments: (Bits) Value KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 75.5 2e-13 KQ557205.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 52.8 4e-06 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 33.9 3.3 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 33.1 6.2 > KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold20, whole genome shotgun sequence Length=29933922 Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 36/44 (82%), Positives = 39/44 (89%), Gaps = 1/44 (2%) Frame = -1 Query 97 PEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNSR 140 PEFSVFVGDL SEVDD+QLHQ F KK+PSCKGAKVVTD YG S+ Sbjct 8997006 PEFSVFVGDLASEVDDFQLHQVF-KKYPSCKGAKVVTDQYGYSK 8996878 Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 32/33 (97%), Positives = 33/33 (100%), Gaps = 0/33 (0%) Frame = -2 Query 46 GSAGYCFVEMADEASVDRCVQRLNGKLVPGSNP 78 GSAGYCFVE+ADEASVDRCVQRLNGKLVPGSNP Sbjct 8998487 GSAGYCFVELADEASVDRCVQRLNGKLVPGSNP 8998389 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/43 (70%), Positives = 34/43 (79%), Gaps = 0/43 (0%) Frame = -1 Query 3 NRMTSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTG 45 N +TS LDPYMDENF+KQAFS MGE+ GVKIITHR+TG Sbjct 8998860 NIVTSFIYF*LDPYMDENFVKQAFSGMGESPLGVKIITHRITG 8998732 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/48 (60%), Positives = 37/48 (77%), Gaps = 1/48 (2%) Frame = -1 Query 140 RGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNKASTYH 187 RGYGFVKF+DE+EQK A+EE Q + LGGK +R+SIAV K A++ H Sbjct 8996511 RGYGFVKFADESEQKAAIEECQG-TMLGGKTLRLSIAVAKRYDATSKH 8996371 Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 30/41 (73%), Gaps = 0/41 (0%) Frame = -3 Query 270 DPNPQVDVEELNRQYMERSEELYDSLMECHWLPMDTITSDI 310 +P P+ DVE N+ +M+ SEELYD+LM C W P+D++ S I Sbjct 8994430 EPIPECDVELWNKDFMQHSEELYDALMNCRWEPLDSVDSPI 8994308 Score = 39.3 bits (90), Expect = 0.078, Method: Compositional matrix adjust. Identities = 17/18 (94%), Positives = 17/18 (94%), Gaps = 0/18 (0%) Frame = -3 Query 79 PRKFKLNYATYGKRPEPG 96 PRKFKLNYATYGKRPE G Sbjct 8997721 PRKFKLNYATYGKRPEAG 8997668 > KQ557205.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold4, whole genome shotgun sequence Length=26266306 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 9/137 (7%) Frame = -2 Query 48 AGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYAT-YGKRPEPGPEFSVFVGDL 106 +GY FVE E D ++ +N + G + ++N A+ + K + G ++F+G+L Sbjct 12140718 SGYGFVEFLSEEDADYAIKIMNMIKLYG----KPIRVNKASAHNKNLDVGA--NIFIGNL 12140557 Query 107 TSEVDDYQLHQFFLKKFPSCKGAKVVTDP-YGNSRGYGFVKFSDENEQKKALEEFQNASG 165 E+D+ L+ F + K++ DP GNS+GY F+ F+ + A+E N Sbjct 12140556 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA-MNGQY 12140380 Query 166 LGGKPIRISIAVNKGNK 182 L +PI +S A K +K Sbjct 12140379 LCNRPITVSYAFKKDSK 12140329 Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 18/33 (55%), Positives = 26/33 (79%), Gaps = 0/33 (0%) Frame = +2 Query 270 DPNPQVDVEELNRQYMERSEELYDSLMECHWLP 302 DP+ VDV E NR +++ SEELYD++++CHW P Sbjct 25444352 DPSLVVDVVETNRSFIDLSEELYDAIIDCHWQP 25444450 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/68 (31%), Positives = 36/68 (53%), Gaps = 0/68 (0%) Frame = -2 Query 6 TSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCV 65 ++++G+LDP +DE + FS G KI+ TG S GY F+ A + D + Sbjct 12140580 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 12140401 Query 66 QRLNGKLV 73 + +NG+ + Sbjct 12140400 EAMNGQYL 12140377 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust. Identities = 13/41 (32%), Positives = 25/41 (61%), Gaps = 0/41 (0%) Frame = +3 Query 122 KFPSCKGAKVVTDPYGNSRGYGFVKFSDENEQKKALEEFQN 162 +F +++ D GN+RGY FV F+++ E + A+++ N Sbjct 7451769 QFGKIYEVRMMMDFNGNNRGYAFVTFTNKQEARTAMKQLNN 7451891 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 43/83 (52%), Gaps = 7/83 (8%) Frame = +2 Query 100 SVFVGDLTSEVDDYQLHQFFLKKFPSC---KGAKVVTDPYGNSRGYGFVKFSDENEQKKA 156 SVF+ +L ++D + L F SC + +++T G SRGYG+V+F A Sbjct 16665407 SVFISNLAYTLEDPEAKLKSL--FESCGPIRRVQLITGNRGISRGYGYVQFESAAAVPDA 16665580 Query 157 LEEFQNASGLGGKPIRISIAVNK 179 L+ + + G+P+ +S V+K Sbjct 16665581 LK--LDRKEVEGRPMFVSPCVDK 16665643 Lambda K H a alpha 0.315 0.133 0.402 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 46045175280 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40