TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000631_2.0 # Protein # Selenocysteine synthase (SecS) # Zebrafish Length=490 Score E Sequences producing significant alignments: (Bits) Value KQ557206.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 114 3e-36 > KQ557206.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold5, whole genome shotgun sequence Length=24035278 Score = 114 bits (285), Expect(2) = 3e-36, Method: Compositional matrix adjust. Identities = 52/54 (96%), Positives = 53/54 (98%), Gaps = 0/54 (0%) Frame = -3 Query 38 QGKCPEEGWSESTIELFLNELAVMDSNNFLGNCGVGEREGRVASSLVARRHYRL 91 QGKCPEEGWSEST+ELFLNELAVMDSNNFLGNCGVGEREGRVASSLVARRHYR Sbjct 15802307 QGKCPEEGWSESTVELFLNELAVMDSNNFLGNCGVGEREGRVASSLVARRHYRF 15802146 Score = 60.8 bits (146), Expect(2) = 3e-36, Method: Compositional matrix adjust. Identities = 29/38 (76%), Positives = 31/38 (82%), Gaps = 0/38 (0%) Frame = -2 Query 1 MNSENFRLSEKLVSASYVRQGLDARRGHEQLIRRLLDQ 38 MNSEN L EK VS+SY+RQG ARRGHEQLIR LLDQ Sbjct 15802485 MNSENVTLCEKTVSSSYIRQGSQARRGHEQLIRHLLDQ 15802372 Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/139 (55%), Positives = 86/139 (62%), Gaps = 47/139 (34%) Frame = -3 Query 177 KSMVTAGFEPVVIENVLEGDELRTNLEEVERKIEEFGAENILCVHSTTSCFAPRVPD--- 233 K + +GFEPVV+ENV+EGDELRT+LE V+RKI++ GAENILCVHSTTSCFAPRVPD Sbjct 15800651 KRFLFSGFEPVVVENVVEGDELRTDLEAVQRKIDDLGAENILCVHSTTSCFAPRVPDRLM 15800472 Query 234 --------------------------------------------RLEELSVLCAKHDIPH 249 RLEEL+ +CAKHDIPH Sbjct 15800471 EDFTVLSNFYSIFVTKHIQLFSFFSECE*RKLLLV*CFCLVPSSRLEELATMCAKHDIPH 15800292 Query 250 IVNNAYGVQSSKCMHLIQQ 268 IVNNAYGVQSSKCMHLIQQ Sbjct 15800291 IVNNAYGVQSSKCMHLIQQ 15800235 Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 53/61 (87%), Positives = 58/61 (95%), Gaps = 0/61 (0%) Frame = -3 Query 123 LDVLKLTGVRSVSSCFVVPMATGMSLTLCFLTLRHRRPKARYILWPRIDQKSCFKSMVTA 182 L +L + GVRSV+SCFVVPMATGMSLTLCFLTLRHRRPKARYI+WPRIDQKSCFKSM+TA Sbjct 15800999 LILLSIPGVRSVASCFVVPMATGMSLTLCFLTLRHRRPKARYIIWPRIDQKSCFKSMITA 15800820 Query 183 G 183 G Sbjct 15800819 G 15800817 Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 39/49 (80%), Positives = 47/49 (96%), Gaps = 0/49 (0%) Frame = -3 Query 403 ARVVPLGVQQTVSGHTFSGFMSHSEAYPCPYLNAASAIGITKGDVTVCM 451 +RV+PLG +QT+SGHTF GFMSHSE+YPCPYLNAASA+GIT+GDVT+CM Sbjct 15792371 SRVIPLGKEQTISGHTFRGFMSHSESYPCPYLNAASAVGITRGDVTLCM 15792225 Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 42/45 (93%), Positives = 45/45 (100%), Gaps = 0/45 (0%) Frame = -1 Query 268 QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFDENFIQEISKIYPG 312 QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFDE+F+QEISK+YPG Sbjct 15799186 QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFDESFVQEISKMYPG 15799052 Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 37/42 (88%), Positives = 42/42 (100%), Gaps = 0/42 (0%) Frame = -3 Query 89 YRLIHGIGRSGDIAAVQPKAAGSSLLNKITNSVVLDVLKLTG 130 +RLIHGIGRSGDIAAVQPKAAGSSLLNK+TNSVVLD+LK++G Sbjct 15801362 FRLIHGIGRSGDIAAVQPKAAGSSLLNKLTNSVVLDILKISG 15801237 Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/125 (40%), Positives = 59/125 (47%), Gaps = 56/125 (45%) Frame = -3 Query 342 KELYGHLAQELSALAARHGERLLKTPHNPISL---------------------------- 373 +E+Y LA+EL +LA+ HGERLL TPHNPISL Sbjct 15794102 QEIYSFLAEELKSLASAHGERLLHTPHNPISLGELKVLITNQHVVSSLSLVSAEFMFLTF 15793923 Query 374 -----------------------AMSLNHLEAHSSSAVTQLGSMLFTRQVSGAR-----V 405 AMSL+ L+A S+ AVTQLGSMLFTRQVSGAR V Sbjct 15793922 PVHPLCVWVSVCVLGVVPLSPPSAMSLDGLQASSNQAVTQLGSMLFTRQVSGARYENWFV 15793743 Query 406 VPLGV 410 PL + Sbjct 15793742 TPLSI 15793728 Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/32 (84%), Positives = 31/32 (97%), Gaps = 0/32 (0%) Frame = -2 Query 311 PGRASASPSLDVLITLLTLGANGYKKLLADRK 342 PGRASASPSLDVLITLLTLG+NGYK+ L++RK Sbjct 15798285 PGRASASPSLDVLITLLTLGSNGYKRYLSERK 15798190 Lambda K H a alpha 0.320 0.134 0.389 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 85950948356 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40