TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000627_2.0 # Protein # SECIS binding protein 2 (SBP2) # Zebrafish Length=362 Score E Sequences producing significant alignments: (Bits) Value KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 112 5e-25 KQ557219.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 102 7e-22 KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 33.9 4.5 KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 33.1 7.3 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/74 (91%), Positives = 73/74 (99%), Gaps = 0/74 (0%) Frame = +1 Query 189 YCNQVLSKDVDECVSNLLKELVRFQDRLYQKDPMKARMKRRLVMGLREvlkhlklkkvkc 248 YC+Q+L KD+DECV++LLKELVRFQDRLYQKDPMKARMKRR+VMGLREVLKHLKLKKVKC Sbjct 26130313 YCSQMLRKDLDECVTSLLKELVRFQDRLYQKDPMKARMKRRIVMGLREVLKHLKLKKVKC 26130492 Query 249 vIISPNCERIQSKG 262 VIISPNCERIQSKG Sbjct 26130493 VIISPNCERIQSKG 26130534 Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/82 (67%), Positives = 60/82 (73%), Gaps = 3/82 (4%) Frame = +1 Query 256 ERIQSKGGLDEALHNIIDTCRDQSVPFVFALSRKALGRCVNKAVPVSLVGIFNYDGAQDH 315 E I S GGLDE LH II+ CR+Q VPFVFALSRKALG CVNKAVPVSLVGIFNYDGAQ Sbjct 26132332 ENIPSTGGLDEVLHTIINMCREQGVPFVFALSRKALGHCVNKAVPVSLVGIFNYDGAQV- 26132508 Query 316 YHKMIELSAEARKSYEVMIANL 337 ++I L A KS+ NL Sbjct 26132509 --RVIILRCRAAKSFTCGY*NL 26132568 Score = 79.3 bits (194), Expect(2) = 6e-20, Method: Compositional matrix adjust. Identities = 42/58 (72%), Positives = 45/58 (78%), Gaps = 1/58 (2%) Frame = +1 Query 43 TVGGALPVVHKEPSVQKKQ-WQQEKTPHNPLDSTCPSVKKGKQREVPKAKKPTPLKRV 99 VGG LPVV K+ S KK WQQ+K HNPLDST P VKKGKQREVPKAKKPTPLK+ Sbjct 26128237 VVGGGLPVVQKQSSALKKPPWQQDKIAHNPLDSTSPLVKKGKQREVPKAKKPTPLKKA 26128410 Score = 40.4 bits (93), Expect(2) = 6e-20, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 37/43 (86%), Gaps = 0/43 (0%) Frame = +2 Query 1 SQQTSQKKSKVPVQLDLGNMLAFLEqkqqsqkskqdqRPVTLT 43 +++ S KKSK PVQLD+GNMLA LE+KQQ+QKSKQD +P+ L+ Sbjct 26128037 AEKVSGKKSKAPVQLDIGNMLAVLEKKQQTQKSKQDSKPIILS 26128165 Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/26 (73%), Positives = 24/26 (92%), Gaps = 0/26 (0%) Frame = +1 Query 313 QDHYHKMIELSAEARKSYEVMIANLD 338 QD YHKMIELSAEAR++YEVM+ +L+ Sbjct 26133325 QDFYHKMIELSAEARRAYEVMLLSLE 26133402 Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (3%) Frame = +3 Query 153 DKLDDGLSENPTLQTEIPNSNPI-SKVPKIHSRKFR 187 D+ D+ +N +Q E+P+S P + VPKIHSRKFR Sbjct 26129427 DEADEDNDKNDDVQQEVPSSEPQQNNVPKIHSRKFR 26129534 Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/39 (54%), Positives = 28/39 (72%), Gaps = 3/39 (8%) Frame = +1 Query 98 RVILREREERKQNRLLEERDPSRVATEAGEKETNDNAED 136 +VIL+EREE+KQ RLLEER + + G + TND AE+ Sbjct 26129158 QVILKEREEKKQRRLLEERG---LLPDNGSEFTNDAAEE 26129265 > KQ557219.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold18, whole genome shotgun sequence Length=33548221 Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 64/104 (62%), Positives = 80/104 (77%), Gaps = 5/104 (5%) Frame = +3 Query 159 LSENPTLQTEIPNSNPISKVPKIHSRKFRDYCNQVLSKDVDECVSNLLKELVRFQDRLYQ 218 L E + T + + +S +P H R YCNQVLSK++DE V+ LL+ELVRFQ+R+YQ Sbjct 9642294 LFEASVVPTNVTTTYNLSPLPP-HCR----YCNQVLSKEIDESVTLLLQELVRFQERVYQ 9642458 Query 219 KDPMKARMKRRLVMGLREvlkhlklkkvkcvIISPNCERIQSKG 262 KDP KA+ KRRLVMGLREV KH+KL K+KCVIISPNCE+IQ+KG Sbjct 9642459 KDPTKAKSKRRLVMGLREVTKHMKLHKIKCVIISPNCEKIQAKG 9642590 Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 44/65 (68%), Positives = 53/65 (82%), Gaps = 3/65 (5%) Frame = +3 Query 262 GGLDEALHNIIDTCRDQSVPFVFALSRKALGRCVNKAVPVSLVGIFNYDGAQ-DH-YH-K 318 GGLDEAL+N+I R+Q +PFVFAL RKALGRCVNK VPVS+VGIFNY GA+ +H YH K Sbjct 9642939 GGLDEALYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYSGAEVEHRYHSK 9643118 Query 319 MIELS 323 ++ S Sbjct 9643119 ILHFS 9643133 Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/45 (56%), Positives = 32/45 (71%), Gaps = 0/45 (0%) Frame = +3 Query 55 PSVQKKQWQQEKTPHNPLDSTCPSVKKGKQREVPKAKKPTPLKRV 99 PS+ + Q PHN LDST P VK+GK+RE+PK K+PT LK+V Sbjct 9639357 PSMLRGHQQALSAPHNALDSTAPRVKRGKEREIPKVKRPTALKKV 9639491 > KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold13, whole genome shotgun sequence Length=22457735 Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust. Identities = 14/51 (27%), Positives = 28/51 (55%), Gaps = 0/51 (0%) Frame = +1 Query 180 KIHSRKFRDYCNQVLSKDVDECVSNLLKELVRFQDRLYQKDPMKARMKRRL 230 K+HS FR +C+ S E ++ + V F+ Y+K+P + ++++ L Sbjct 18871366 KLHSSVFRGFCDISCSATTGEEGTSFYSQFVLFESV*YEKEPQQLKIEQML 18871518 > KQ557225.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold24, whole genome shotgun sequence Length=55650406 Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 24/39 (62%), Gaps = 0/39 (0%) Frame = -1 Query 275 CRDQSVPFVFALSRKALGRCVNKAVPVSLVGIFNYDGAQ 313 C D++VP+VF S++ALGR + PV + +G+Q Sbjct 9942874 CEDKNVPYVFVRSKQALGRACGVSRPVIATSVTIKEGSQ 9942758 Lambda K H a alpha 0.314 0.132 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 56434843906 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40